Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01300 ATGGCGGAAGGGCTTGTTCTGCGAGGGACTATGAGGGCTCACACCGACATGGTGACGGCCATCGCTACTCCCATCGACAATTCCGATATGATTGTCACCTCTTCCCGTGACAAATCCATCATCTTGTGGCGTCTCACCAAGGAAGAGAAGACCTACGGTGTTCCTCAACGAAGGCTCAATGGCCACTCTCACTTCGTTCAGGATGTTGTCCTCTCATCCGACGGTCAGTTCGCCCTATCTGGTTCCTGGGACGGCGAGCTCCGCCTCTGGGACCTAGCTACCGGCGTTACATCCCGTCGATTTGTCGGACATTCGAAAGATGTTCTCTCTGTCGCCTTCTCCATCGACAATCGCCAGATCGTCTCCGCCTCTCGTGACCGAACGATCAAGCTATGGAACACTCTCGGTGAGTGCAAGTACACAATCCAGGACGGTGATGCTCACTCTGACTGGGTTAGCTGTGTTAGATTTAGCCCTAACACGCTCCAGCCAACTATTGTTTCGGCGTCTTGGGACAAAACCGTGAAAGTTTGGAACTTGACCAATTGCAAGTTGAGAGTTACTCTCGCTGGTCACGCTGGTTATGTTAACACGGTGGCTGTTTCGCCGGATGGGTCTCTGTGCGCTAGCGGAGGCAAAGACGGAGTGATTTTGCTGTGGGATTTGGCTGAGGGTAAGAGGCTTTATTCCTTGGATGCCGGATCGATTATTCATGCTCTTTGTTTCAGCCCCAACAGGTACTGGCTCTGTGCTGCAACTGAGAGCAGTATTAAGATCTGGGATTTGGAGAGCAAAAGCATTGTGGAGGACCTGAAGGTCGATTTAAAAACCGAGGCGGAGAAAACTGATGACACCCATGCTGCTACTGCCAACAAGATTAAGGTTATTTACTGCACAAGTTTGAGCTGGAGCGCAGATGGGAGCACATTGTTTGGTGGCTACACAGATGGAGTCGTCAGAGTTTGGGGAATAGGTCGTTACTAG 984 51.32 MAEGLVLRGTMRAHTDMVTAIATPIDNSDMIVTSSRDKSIILWRLTKEEKTYGVPQRRLNGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGVTSRRFVGHSKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLTNCKLRVTLAGHAGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAEKTDDTHAATANKIKVIYCTSLSWSADGSTLFGGYTDGVVRVWGIGRY 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23539081 23541486 - Lsi06G013000.1 Lsi06g01300 666030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01300 327 CDD WD40 7 322 - -
Lsi06g01300 327 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Lsi06g01300 327 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Lsi06g01300 327 Pfam WD domain, G-beta repeat 54 91 IPR001680 GO:0005515
Lsi06g01300 327 Pfam WD domain, G-beta repeat 98 133 IPR001680 GO:0005515
Lsi06g01300 327 Pfam WD domain, G-beta repeat 299 322 IPR001680 GO:0005515
Lsi06g01300 327 Pfam WD domain, G-beta repeat 235 261 IPR001680 GO:0005515
Lsi06g01300 327 Pfam WD domain, G-beta repeat 188 221 IPR001680 GO:0005515
Lsi06g01300 327 Pfam WD domain, G-beta repeat 146 179 IPR001680 GO:0005515
Lsi06g01300 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Lsi06g01300 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Lsi06g01300 327 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 327 IPR045223 GO:0015935|GO:0043022
Lsi06g01300 327 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Lsi06g01300 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Lsi06g01300 327 SMART WD40_4 289 323 IPR001680 GO:0005515
Lsi06g01300 327 SMART WD40_4 94 133 IPR001680 GO:0005515
Lsi06g01300 327 SMART WD40_4 135 179 IPR001680 GO:0005515
Lsi06g01300 327 SMART WD40_4 182 221 IPR001680 GO:0005515
Lsi06g01300 327 SMART WD40_4 52 91 IPR001680 GO:0005515
Lsi06g01300 327 SMART WD40_4 224 261 IPR001680 GO:0005515
Lsi06g01300 327 SMART WD40_4 4 44 IPR001680 GO:0005515
Lsi06g01300 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 95 - -
Lsi06g01300 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Lsi06g01300 327 SUPERFAMILY WD40 repeat-like 7 324 IPR036322 GO:0005515
Lsi06g01300 327 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Lsi06g01300 327 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Lsi06g01300 327 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Lsi06g01300 327 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Lsi06g01300 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Lsi06g01300 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Lsi06g01300 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Lsi06g01300 327 Gene3D - 4 327 IPR015943 GO:0005515
Lsi06g01300 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Lsi06g01300 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Lsi06g01300 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 327 IPR001680 GO:0005515
Lsi06g01300 327 PANTHER BNAA06G12310D PROTEIN 1 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01300 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein - csv:101216713 663.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01475 Lsi-Chr4:22488872 Lsi06g01300 Lsi-Chr6:23539081 5.86E-06 dispersed
Lsi06g01300 Lsi-Chr6:23539081 Lsi04g02077 Lsi-Chr4:27946198 2.06E-10 dispersed
Lsi08g00163 Lsi-Chr8:3354215 Lsi06g01300 Lsi-Chr6:23539081 3.32E-18 dispersed
Lsi06g01300 Lsi-Chr6:23539081 Lsi02g02285 Lsi-Chr2:29422484 5.73E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005819 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01300 Lsi_Chr06 FPKM 0.513812 0.839729 0.0 0.0 0.0 0.0 0.0 0.234877 0.0 0.0
Lsi06g01300 Lsi_Chr00 FPKM 0.27046 0.421085 0.0 0.0 0.099895 0.0 0.0 0.0 0.0 0.0
Lsi06g01300 Lsi_Chr00 FPKM 0.585185 0.555821 0.0 0.0 0.0 0.0 0.161588 0.132237 0.0 0.0