Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01302 ATGCAAAGATCACCAACAATGGCAGAGGTAAAGATAATTGGGGCAGCTACAAGCCTATTCTGCACAAGGGTTGAATGGGCCTTGAAGCTCAAAGGAATTGAGTACGAGTACATACCTGAAGACTTGAGAAACAAAAGTGAGTTGCTTCTCAAGTCCAACCCTGTGCTCAAGAAAATACCTGTGCTTTTGCACAATGACAAAGCCATCTCCGAGTCGCTTCTCATTATCGAATACATCGACGAGACGTGGAAGGAGAACCCAATATTGCCTGAAGATCCGTATGACAGAGCCAATGCTCGCTTCTGGGCTAAGTTTCTAGATGAGAAGGGCGTGTTCGGTGCGTGGGAAGCTTGCCAGGCTGAAGGAGAAGAGAAGGAGAAGGCTGTGGAGACTGCAGTACAAAATTTAGCATTATTTGACAAAGAAATACAAGGAAAGAAATTCTTTGGTGGAGAGCAAATTGGTTACCTAGATTTAGCTGCAGGTTGGATGTGCCACTGGCTCAATGTTCTGGATGAAGTGGGAGAAATGAATGTGTTTGACAAAGAGAGGGTCCCATCCCTTCATGAATGGGCTCAGAACTTCATTCACATTCCAGTTATCAAAGAATCCCTTCCACCCAGAGAAACTCTTGTCAACTACTTCAAGGGGAGTCTGAGCTACGTCCGGTCCTTAGCTGCAAAAAAGTAA 690 45.07 MQRSPTMAEVKIIGAATSLFCTRVEWALKLKGIEYEYIPEDLRNKSELLLKSNPVLKKIPVLLHNDKAISESLLIIEYIDETWKENPILPEDPYDRANARFWAKFLDEKGVFGAWEACQAEGEEKEKAVETAVQNLALFDKEIQGKKFFGGEQIGYLDLAAGWMCHWLNVLDEVGEMNVFDKERVPSLHEWAQNFIHIPVIKESLPPRETLVNYFKGSLSYVRSLAAKK 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23562948 23564527 - Lsi06G013020.1 Lsi06g01302 666032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01302 229 PANTHER GLUTATHIONE S-TRANSFERASE 7 226 - -
Lsi06g01302 229 Pfam Glutathione S-transferase, C-terminal domain 124 193 - -
Lsi06g01302 229 Gene3D Glutaredoxin 4 88 - -
Lsi06g01302 229 SUPERFAMILY GST C-terminal domain-like 81 217 IPR036282 -
Lsi06g01302 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 8 87 IPR004045 -
Lsi06g01302 229 Gene3D - 89 224 - -
Lsi06g01302 229 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 7 226 IPR045073 -
Lsi06g01302 229 CDD GST_N_Tau 10 83 - -
Lsi06g01302 229 SFLD Main.3: Omega- and Tau-like 7 221 IPR045073 -
Lsi06g01302 229 CDD GST_C_Tau 93 217 IPR045074 GO:0004364|GO:0006749
Lsi06g01302 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 215 IPR010987 -
Lsi06g01302 229 SUPERFAMILY Thioredoxin-like 10 108 IPR036249 -
Lsi06g01302 229 SFLD Glutathione Transferase (cytosolic) 7 221 IPR040079 -
Lsi06g01302 229 Pfam Glutathione S-transferase, N-terminal domain 16 81 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01302 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101217418 428.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00429 Lsi-Chr4:4091010 Lsi06g01302 Lsi-Chr6:23562948 2.66E-55 dispersed
Lsi05g01929 Lsi-Chr5:26481032 Lsi06g01302 Lsi-Chr6:23562948 9.22E-69 dispersed
Lsi06g01302 Lsi-Chr6:23562948 Lsi01g01490 Lsi-Chr1:12986980 5.39E-61 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g252 . . . . . . . . . . . Cma11g00299 . . Sed08g0385 . . Bhi02g00117 Tan09g1846 Cmetu02g0734 . Hepe09g0371 . . Cla06g01435 Cam06g1590 Cec06g1650 Cco06g1642 Clacu06g1551 Cmu06g1506 Cre06g2315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01302 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013759 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 3 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01302 Lsi_Chr06 FPKM 0.0 0.0 0.039202 0.0 0.0 0.0 0.0 0.04316 0.045296 0.083571
Lsi06g01302 Lsi_Chr00 FPKM 0.0 0.0 0.037578 0.0 0.0 0.0 0.0 0.041372 0.043419 0.080109