Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01303 ATGGCTGAGCTCGATCCATCAAAGAAAGTGGCCGATAGATATTTAAAGCGTGAGGTTCTTGGGGAGGGTACCTATGGTGTTGTATATAAAGCCATTGATACTCAGACAGGTCAGACGGTTGCAATCAAGAAAATTAGGCTTGGGAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATAAAGCTGCTTAAAGAGCTCAAAGATTCAAATATTATTGAGTTAATTGATGCATTCCCTCACAAAGGAAATTTGCATCTTGTATTTGAGTTTATGGAGACAGATCTTGAAGCTGTCATACGTGATCGAAACATATTTCTTTCCCCAGCTGACATAAAATCATACCTTCAGATGACGTTGAAAGGCCTTGCATATTGCCACAAGAAATGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCAAATGGTCAATTGAAACTTGCAGATTTTGGTTTGGCTCGGATATTTGGGAGTCCGGATCGTAGATTTACTCACCAGGTGTTTGCCCGGTGGTACAGAGCACCCGAGTTATTGTTTGGCACTAAGCAATATGGTTCTGCAGTGGATGTTTGGGCGGCAGCTTGTATTTTTGCTGAACTACTACTTCGTCGACCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATTTTTGCAGCTTTTGGAACTCCTACGCCTTCACAATGGCCTGATATGTTATACCTACCTGATTACGTTGAGTTCCAATATGTTCCTGCACCTCCTCTACGATCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCATATGATCCAAAATCTAGAATTACCATTCAACAAGCATTGGAGCATAGGTACTTCTCATCCGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTACGAACTCTCGAGTTTTGGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCTAGAAGAGTAATGCCAGAGCGTGATGCTTTTGAAGGAAATGCATATAGAGCTGATAGGCTTGATGACCATGTTAATGAGGTGCGAGAGTTAGCTGCTGGAAATACAAGCAAGAATGAAGTGGTGCCAATGTCGTTGGATTTTTCTATTTTTGGTGGAAAATCTCCAAATAGACCTACAATTAACAGGTAA 1203 41.23 MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRITIQQALEHRYFSSAPLPTDPSKLPRPTSKREPTNSRVLDLNSNEGPTVLSPPRKSRRVMPERDAFEGNAYRADRLDDHVNEVRELAAGNTSKNEVVPMSLDFSIFGGKSPNRPTINR 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23571443 23575648 + Lsi06G013030.1 Lsi06g01303 666033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01303 400 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Lsi06g01303 400 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01303 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lsi06g01303 400 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01303 400 MobiDBLite consensus disorder prediction 310 332 - -
Lsi06g01303 400 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Lsi06g01303 400 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01303 400 Gene3D Phosphorylase Kinase; domain 1 10 94 - -
Lsi06g01303 400 PANTHER CELL DIVISION PROTEIN KINASE 9 360 - -
Lsi06g01303 400 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Lsi06g01303 400 MobiDBLite consensus disorder prediction 296 341 - -
Lsi06g01303 400 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 360 - -
Lsi06g01303 400 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01303 Lsi-Chr6:23571443 Lsi10g00941 Lsi-Chr10:13838210 2.65E-76 dispersed
Lsi11g00250 Lsi-Chr11:2550722 Lsi06g01303 Lsi-Chr6:23571443 9.90E-18 dispersed
Lsi06g01303 Lsi-Chr6:23571443 Lsi08g01606 Lsi-Chr8:24018415 5.09E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83742 PF00069 Pkinase 1.50E-72 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01303 K02202 - csv:101217645 788.104