Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01305 ATGCCTTACTCAACCTTCTTCAACGCCTATATCAGGACTTCCATGTCCATCTCCTTCAGACCCACTTCTCTTTCTCCGTTTTCCATATCTTCAACCCGCTTCACACCTTGCTTTCCTCATCTTTTCACCCGGAGGAGCCTTTCCATGGGGTTTGTCAACTTCTACTCTCGTCCGGGTTCCGTGTCTGGTGTTCGTTGTACCAGCCAATCCAAGTGGGTTGAAGTTCCCTTGAGGGAGAAACTGCAGGACCATGTCAAGGGTTTCCCGCAGAGGGATGTCGCCTTCCCGTTTTGGCAGCATCAGCCTTGCTCCAATTATGGTCGGTTTGCGTATGAGGATGTTTCCAGTGATGATTCTGATGTCGAATTTGGGTCTCCCCAGGGGCAAATGATTGGAGTTGCATTTAATGATTCTAGTGTCGAAATGACGAGCAAATACATGGAGAATAAGAATGACAAATTAATGATTACCTTATGTACACTTCAATTCCTGAACAGTGGAATAGTTACTTTACTTCTGGCTTTGTTCATCATACATTCTCTTCATGATTTCCAGAGTTCATCAACCCTTGATAACGTAGATGAGTGGAGATGGAAGCTAACCATGCTTCTACGAAACAATGATGAACTCGAAGTAGTGTCAAGGGAGAAAAAGGATAGACGTGATTTTGAGCAACTTTCAGCATTGGCAACCAGAATGGGTTTGCATAGAACTCATGTCATATGGCGCTTATTGACATTGTTTTCAATTGCTTTGGCAGCCGTCAATATGCCAAAGTTGTCTAAAGATCCTCTACCGAATTACAGGCCGGACCTGGATGATAAGCGACCACAGAGAGAGGTATTTATTTGTTCATTCCCAGATTTTCTAGTATTGTTTCGACTTGCGAGGATGAGTATACTAATTGAGTATACCTTCTTCTTCTTCTTCTTCTTTGTTGTCGTCTTACCTTTTGGGGTCCAAAGGGAAGTGGAAGGCCATCTAAGATTGTACCAATCTTCTCACAAGTCTGTGTCAAGAGGATGTTTTTCAAATCGTTACTTGCAAAAATCTGGGAATGCTGAAAACTGTGTTAACAATAATGGACTGTTTGAGCACCAGGAACCTTTGACAACACAAAGTGTTGTCATGGAGAAAATTCATCGCCGCAAAAGTTTGCAACTGAGGAATCAACAGCAAGATTGGCAGGAATCTCTTGAGGGCCAAAAAATGATAGAATTTCGCAAAAGTCTCCCTGCATTCAAAGAGAGGGAAACATTGTTAAAGGCCATTTCAGAAAATCAGGTAGTTGTTGTCTCAGGTGAAACTGGTTGTGGCAAAACCACACAGCTTCCTCAGTATATTTTAGAATCTGAGATTGAAGCTGCTCGTGGAGCTTCTTGTAGTATTATCTGTACTCAGCCTAGACGTATTTCTGCCATGGCTGTTTCTGAAAGAGTTGCTGCAGAACGTGGAGAGAAACTGGGAGAGTCTGTTGGTTATAAAGTTCGGCTGGAGGGTATAAAAGGAAGGGACACTCGTCTTCTCTTTTGCACCACTGGTATACTATTGAGAAGATTGCTTGTTGACAGAAATTTGAAAGGTGTAACTCATGTTATTATTGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTTGTTATTGTCCTGAAAGATCTTCTTCCTCGACGGCCGGACTTGAGGTTGATCTTAATGAGCGCGACTCTAAATGCCGAACTTTTTTCTTCTTATTTTGGTGGTGCTCCAACAATGCATATACCTGGATTTACATACCCAGTTCGTGCACACTTTTTGGAGAATATTCTTGAGATTACTGGCTATCGATTGACTCCATATAATCAAATTGATGATTATGGTCAAGAAAAGGCATGGAAAATGCAAAAACAAGCTCAAGCTCTAAAGAAAAGAAAGACTCAGATTGCTTCATCTGTTGAGGATGCATTTGAGGCTGCTAACTTTTCAGCATACAGTCCTCAGACTCGGGATTCTCTATCATGTTGGAATCCTGACTCAATTGGTTTCAACCTCATTGAGCATGTCCTCTCTTACATTGTCAAGAGGGAGAGGCCAGGTGCTATATTAGTTTTTATGACTGGTTGGGATGATATAAACTCTTTAAAGGACCAGCTCCACTCTCATCCTTTATTAGGGGATCCTAGCAGAGTTAATATGAAATACTGCTTAGCATCTTTGAATTTGAAAGCTGCCTTTCATCTGACAATAACCTTTTTGTATATATTTTATCTATTGAAACAGAAATTGATCTTTGATAAACCTGAAGATGGAGTTAGGAAAATAGTCCTAGCTACAAACATGGCAGAGACTAGTATCACCATCAATGACGTGGTTTTTGTTGTTGACTGCGGAAAAGCAAAGGAGACATCCTATGATGCACTAAATAATACTCCTTGTTTGCTTCCATCCTGGATCTCCAAGGCTGCTGCACGGCAAAGAAGAGGTAGGGCTGGTCGTGTTCAACCTGGCGAGTGTTACCATCTCTATCCCAGATGCGTATATGATGCTTTTGCCGATTATCAACTGCCAGAACTTTTAAGGACCCCATTGCAGTCTTTGTGTTTGCAAATCAAGAGCCTGCAACTTGGAAGTATATCAGAGTTCCTATCAAATGCATTGCAGCCGCCAGAGCCTTTATCAGTTCAAAATGCCATAGACTATTTGAAGACAATTGGAGCTCTAGATATGAAAGAAAATCTGACAGTTCTTGGTGTGGATTCCATCCTCTTTTCCCTTGTGTTGAAAAATAAATTTCTAATTATTTCTACTGTTACTTGGCAACACTTGTCAGTTCTTCCAGTTGAGCCTAAACTAGGAAAAATGCTTATATTAGGAGCTATTTTCAACTGTCTTGATCCAATTATGACTATTGTTGCTGGTCTTAGTGTCAGAGATCCTTTCCTTATGCCATCTGATAAAAAAGATTTAGCCGAATCAGCAAAAGCACAGTTTGCTGGACGTGACTGTAGTGATCATCTTGCCTTAGTTCGAGCTTATCAGGGTTGGAGAGATGCTGAAAAACAGCAATCCGGTTATGAGTACTGTTGGAGAAACTTTCTCTCCATGCAAACTCTTAGAGCCATGGACTCTTTGAGGAAGCAGTTCTTCTGTTTGCTGAAGGACACTGGTCTAGTTGATTATGATTCAGAAAAATGCAACATCTCGAACCACGACGAGCACTTAATCCGTGCAGTCATCTGTTCTGGTTTGTTTCCCGGAATTTGCTCTGTTGTGAATCATTTTGAACAGAACAAAGAGAAATCAGTAGCTTTGAAAACAATGGAAGATGGTCAGGTTATGCTATACTCGGTAAGTTTTTCTCATTTCATGGCTACTCGGTTACTTATTTTATTTCCACTCATAATCCCCTTCCAACTCATTCTACCGTTTTATTGCATGGAGGGTAACTCAGTTAATGCTGGCTATCCAAAAATTCCCTACCCTTGGCTGGTGTTTAATGAAAAGGTGAAAGTCAATTCAGTCTTTCTTCGGGATTCTACTGGGATTTCTGACTCTATCCTGCTTTTATTTGGAGGAAATGTTTCAAGAGGAGGACTTGATGGTCACCTCAAAATGCTGGATGGTTATTTGGAGTTTTTCATGAAACCTGCATTGGCCGAGACTTATTTGAGCCTTAAAGGGGAGCTTGATGAGCTTGTTCGTCAAAAACTTTTGAATCCGAAGTTAGAAATGGAGCAACACAATGAACTACTATCAGCGATAAGGTTGTTGGTGTCAGAGGATCGCTGTGAGGGTAGGTTTGTCTTTGGTTACCGTGTGCCTGTACCATCAGAAAAAGCGATAACCAACGGTCTACCTCGACAGAAAAATGGTGATGGAGCTGGGGGTGATAATTCCAAGAGTCAGCTTCAGACCCTACTTCAGAGAGCTGGACATGAAACACCAACTTACAAAACTAAGCAATTAAAAAACAACCAGTTCCGCTCCACTGTTATTTTCAACGGGTTGAACTTTGTGGGCCAACCCTGTGGCAGCAAGAAACTTGCGGAAAAAGATGCAGCTTCTGAGGCTATGCTATGGCTACAGGGTGAGACACATTCATCTTCCCAAGCTATCGATCATGCTTCCATACTTCTGAAAAAGAGCAAAATGAAAAATGATAAAACATCATTTCGTAGTGCCAAATGGAGTTGA 4173 41.34 MPYSTFFNAYIRTSMSISFRPTSLSPFSISSTRFTPCFPHLFTRRSLSMGFVNFYSRPGSVSGVRCTSQSKWVEVPLREKLQDHVKGFPQRDVAFPFWQHQPCSNYGRFAYEDVSSDDSDVEFGSPQGQMIGVAFNDSSVEMTSKYMENKNDKLMITLCTLQFLNSGIVTLLLALFIIHSLHDFQSSSTLDNVDEWRWKLTMLLRNNDELEVVSREKKDRRDFEQLSALATRMGLHRTHVIWRLLTLFSIALAAVNMPKLSKDPLPNYRPDLDDKRPQREVFICSFPDFLVLFRLARMSILIEYTFFFFFFFVVVLPFGVQREVEGHLRLYQSSHKSVSRGCFSNRYLQKSGNAENCVNNNGLFEHQEPLTTQSVVMEKIHRRKSLQLRNQQQDWQESLEGQKMIEFRKSLPAFKERETLLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIIDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTMHIPGFTYPVRAHFLENILEITGYRLTPYNQIDDYGQEKAWKMQKQAQALKKRKTQIASSVEDAFEAANFSAYSPQTRDSLSCWNPDSIGFNLIEHVLSYIVKRERPGAILVFMTGWDDINSLKDQLHSHPLLGDPSRVNMKYCLASLNLKAAFHLTITFLYIFYLLKQKLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSNALQPPEPLSVQNAIDYLKTIGALDMKENLTVLGVDSILFSLVLKNKFLIISTVTWQHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPSDKKDLAESAKAQFAGRDCSDHLALVRAYQGWRDAEKQQSGYEYCWRNFLSMQTLRAMDSLRKQFFCLLKDTGLVDYDSEKCNISNHDEHLIRAVICSGLFPGICSVVNHFEQNKEKSVALKTMEDGQVMLYSVSFSHFMATRLLILFPLIIPFQLILPFYCMEGNSVNAGYPKIPYPWLVFNEKVKVNSVFLRDSTGISDSILLLFGGNVSRGGLDGHLKMLDGYLEFFMKPALAETYLSLKGELDELVRQKLLNPKLEMEQHNELLSAIRLLVSEDRCEGRFVFGYRVPVPSEKAITNGLPRQKNGDGAGGDNSKSQLQTLLQRAGHETPTYKTKQLKNNQFRSTVIFNGLNFVGQPCGSKKLAEKDAASEAMLWLQGETHSSSQAIDHASILLKKSKMKNDKTSFRSAKWS 1390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23612871 23621377 - Lsi06G013050.1 Lsi06g01305 666035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01305 1390 Gene3D - 869 992 - -
Lsi06g01305 1390 Pfam Helicase associated domain (HA2) 890 991 IPR007502 GO:0004386
Lsi06g01305 1390 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 421 588 IPR014001 -
Lsi06g01305 1390 SMART ultradead3 409 602 IPR014001 -
Lsi06g01305 1390 CDD SF2_C_RHA 657 835 - -
Lsi06g01305 1390 Pfam DEAD/DEAH box helicase 420 572 IPR011545 GO:0003676|GO:0005524
Lsi06g01305 1390 Pfam Helicase conserved C-terminal domain 678 826 IPR001650 -
Lsi06g01305 1390 Pfam Double-stranded RNA binding motif 1292 1352 IPR014720 -
Lsi06g01305 1390 Gene3D - 670 845 IPR027417 -
Lsi06g01305 1390 SMART DRBM_3 1292 1355 IPR014720 -
Lsi06g01305 1390 CDD DEXHc_RHA-like 427 587 - -
Lsi06g01305 1390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 1025 IPR027417 -
Lsi06g01305 1390 SMART ha2_5 889 1002 IPR007502 GO:0004386
Lsi06g01305 1390 MobiDBLite consensus disorder prediction 1273 1293 - -
Lsi06g01305 1390 PANTHER ATP-DEPENDENT RNA HELICASE 314 1112 - -
Lsi06g01305 1390 PANTHER ATP-DEPENDENT RNA HELICASE 1139 1298 - -
Lsi06g01305 1390 Gene3D - 362 589 IPR027417 -
Lsi06g01305 1390 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 677 867 IPR001650 -
Lsi06g01305 1390 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 314 1112 - -
Lsi06g01305 1390 SUPERFAMILY dsRNA-binding domain-like 1290 1364 - -
Lsi06g01305 1390 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1291 1356 IPR014720 -
Lsi06g01305 1390 SMART helicmild6 734 827 IPR001650 -
Lsi06g01305 1390 Gene3D - 1279 1359 - -
Lsi06g01305 1390 CDD DSRM_SF 1297 1351 - -
Lsi06g01305 1390 PANTHER ATP-DEPENDENT RNA HELICASE 186 283 - -
Lsi06g01305 1390 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 186 283 - -
Lsi06g01305 1390 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 1139 1298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01305 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101211075 2017.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01305 Lsi-Chr6:23612871 Lsi11g00480 Lsi-Chr11:5083838 3.50E-39 dispersed
Lsi11g00092 Lsi-Chr11:948564 Lsi06g01305 Lsi-Chr6:23612871 1.85E-06 dispersed
Lsi02g02212 Lsi-Chr2:28551142 Lsi06g01305 Lsi-Chr6:23612871 1.30E-77 transposed
Lsi02g02437 Lsi-Chr2:30933374 Lsi06g01305 Lsi-Chr6:23612871 2.23E-56 transposed
Lsi03g01071 Lsi-Chr3:20522229 Lsi06g01305 Lsi-Chr6:23612871 9.21E-12 transposed
Lsi03g01813 Lsi-Chr3:29579517 Lsi06g01305 Lsi-Chr6:23612871 0 transposed
Lsi04g00190 Lsi-Chr4:2019089 Lsi06g01305 Lsi-Chr6:23612871 0 transposed
Lsi05g00151 Lsi-Chr5:2180594 Lsi06g01305 Lsi-Chr6:23612871 2.90E-14 transposed
Lsi06g00679 Lsi-Chr6:10551407 Lsi06g01305 Lsi-Chr6:23612871 5.79E-19 transposed
Lsi07g00812 Lsi-Chr7:9063280 Lsi06g01305 Lsi-Chr6:23612871 2.23E-77 transposed
Lsi04g00213 Lsi-Chr4:2233831 Lsi06g01305 Lsi-Chr6:23612871 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01305 Lsi_Chr06 FPKM 13.921787 15.418659 30.316828 30.28117 68.333107 59.548252 68.116905 33.201836 41.189079 40.929783