Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01306 ATGATTGTGACAGGCCTTTGCATTTTGCCTCCTTTTGGCAAAAGAAAGAGTGAAAAACAAGCAAATATGGCAAAGGGAAATCTTGTCTCTGAGAAAATAAAGCTCCTTCTTGCATTGATTGCTTTGCAGTTGTGTTATGCAGGATTTCACATTGTCTCACGAGTTGCTTTAAACATTGGTGTTAGTAAAGTCGTCTATCCGGTGTATCGAAACGCGATTGCCTTAGCTCTGTTGAGTCCTTTTGCTTATTTTCTAGAGAAGAATGAAAGGCCACCACTTACTTTCTCTTTGCTGTTTCAGTTCTTCCTTCTAGCTTTATTGGGGATTACTGCCAATCAAGGATTCTATCTCTTGGGGCTAAACTATGCATCTCCAACTTTTGCTTCTGCAATGCAAAACTCAGTTCCTGCTATTACCTTTGTAATGGCTTCTGTTCTGAGAGGCCCTCCACTTCTCCACAACAACTACCTAACTCAAGGAAGTAGCATTTTAGAGATGGATGACCCTACAATTAAAGTGCAGAATTGGAGATGGGGTTGTATTTACCTGCTAGGCCACTGCCTTTCTTGGGCTGGTTGGATGGTTTTTCAGGGTGTTGTAGCTTCTGGCATTGTCTTTTCTCTTCAAACATGGTGCATCCACAAAAGTGATCCTGTCTTTGTTGCTGTCTTCCAGCCTCTCCAAACTTTCCTAGTAGCCATCATGGCATTTCTCATCCTCGGCGATCGGTTATTCTCCGGCGGGGTTATTGGTGCTGTTCTTATAACACTTGGGCTTTACTCAGTTCTGTGGGGAAAAAGTAAAGAAAAGGCATTGGAAGAACAGGATAATTCTTTGAAACATCCTCTTTTGGATGCCCAAAAAGGAGACAAAGAAGACAATGTTGTTTCAGACATACCATGA 903 41.97 MIVTGLCILPPFGKRKSEKQANMAKGNLVSEKIKLLLALIALQLCYAGFHIVSRVALNIGVSKVVYPVYRNAIALALLSPFAYFLEKNERPPLTFSLLFQFFLLALLGITANQGFYLLGLNYASPTFASAMQNSVPAITFVMASVLRGPPLLHNNYLTQGSSILEMDDPTIKVQNWRWGCIYLLGHCLSWAGWMVFQGVVASGIVFSLQTWCIHKSDPVFVAVFQPLQTFLVAIMAFLILGDRLFSGGVIGAVLITLGLYSVLWGKSKEKALEEQDNSLKHPLLDAQKGDKEDNVVSDIP 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23624029 23626696 - Lsi06G013060.1 Lsi06g01306 666036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01306 300 PANTHER WAT1-RELATED PROTEIN 147 197 IPR030184 GO:0016021|GO:0022857
Lsi06g01306 300 PANTHER WAT1-RELATED PROTEIN 196 273 IPR030184 GO:0016021|GO:0022857
Lsi06g01306 300 PANTHER WAT1-RELATED PROTEIN 31 147 IPR030184 GO:0016021|GO:0022857
Lsi06g01306 300 SUPERFAMILY Multidrug resistance efflux transporter EmrE 188 268 - -
Lsi06g01306 300 Pfam EamA-like transporter family 37 148 IPR000620 GO:0016020|GO:0016021
Lsi06g01306 300 Pfam EamA-like transporter family 192 263 IPR000620 GO:0016020|GO:0016021
Lsi06g01306 300 SUPERFAMILY Multidrug resistance efflux transporter EmrE 69 148 - -
Lsi06g01306 300 PANTHER WAT1-RELATED PROTEIN 147 197 - -
Lsi06g01306 300 PANTHER WAT1-RELATED PROTEIN 196 273 - -
Lsi06g01306 300 PANTHER WAT1-RELATED PROTEIN 31 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01306 Lsi-Chr6:23624029 Lsi01g01762 Lsi-Chr1:16447996 5.39E-42 dispersed
Lsi06g01306 Lsi-Chr6:23624029 Lsi08g01356 Lsi-Chr8:21887221 2.52E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01306 - - cmo:103494154 451.055