Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01306 | ATGATTGTGACAGGCCTTTGCATTTTGCCTCCTTTTGGCAAAAGAAAGAGTGAAAAACAAGCAAATATGGCAAAGGGAAATCTTGTCTCTGAGAAAATAAAGCTCCTTCTTGCATTGATTGCTTTGCAGTTGTGTTATGCAGGATTTCACATTGTCTCACGAGTTGCTTTAAACATTGGTGTTAGTAAAGTCGTCTATCCGGTGTATCGAAACGCGATTGCCTTAGCTCTGTTGAGTCCTTTTGCTTATTTTCTAGAGAAGAATGAAAGGCCACCACTTACTTTCTCTTTGCTGTTTCAGTTCTTCCTTCTAGCTTTATTGGGGATTACTGCCAATCAAGGATTCTATCTCTTGGGGCTAAACTATGCATCTCCAACTTTTGCTTCTGCAATGCAAAACTCAGTTCCTGCTATTACCTTTGTAATGGCTTCTGTTCTGAGAGGCCCTCCACTTCTCCACAACAACTACCTAACTCAAGGAAGTAGCATTTTAGAGATGGATGACCCTACAATTAAAGTGCAGAATTGGAGATGGGGTTGTATTTACCTGCTAGGCCACTGCCTTTCTTGGGCTGGTTGGATGGTTTTTCAGGGTGTTGTAGCTTCTGGCATTGTCTTTTCTCTTCAAACATGGTGCATCCACAAAAGTGATCCTGTCTTTGTTGCTGTCTTCCAGCCTCTCCAAACTTTCCTAGTAGCCATCATGGCATTTCTCATCCTCGGCGATCGGTTATTCTCCGGCGGGGTTATTGGTGCTGTTCTTATAACACTTGGGCTTTACTCAGTTCTGTGGGGAAAAAGTAAAGAAAAGGCATTGGAAGAACAGGATAATTCTTTGAAACATCCTCTTTTGGATGCCCAAAAAGGAGACAAAGAAGACAATGTTGTTTCAGACATACCATGA | 903 | 41.97 | MIVTGLCILPPFGKRKSEKQANMAKGNLVSEKIKLLLALIALQLCYAGFHIVSRVALNIGVSKVVYPVYRNAIALALLSPFAYFLEKNERPPLTFSLLFQFFLLALLGITANQGFYLLGLNYASPTFASAMQNSVPAITFVMASVLRGPPLLHNNYLTQGSSILEMDDPTIKVQNWRWGCIYLLGHCLSWAGWMVFQGVVASGIVFSLQTWCIHKSDPVFVAVFQPLQTFLVAIMAFLILGDRLFSGGVIGAVLITLGLYSVLWGKSKEKALEEQDNSLKHPLLDAQKGDKEDNVVSDIP | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 23624029 | 23626696 | - | Lsi06G013060.1 | Lsi06g01306 | 666036 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01306 | 300 | PANTHER | WAT1-RELATED PROTEIN | 147 | 197 | IPR030184 | GO:0016021|GO:0022857 | |
Lsi06g01306 | 300 | PANTHER | WAT1-RELATED PROTEIN | 196 | 273 | IPR030184 | GO:0016021|GO:0022857 | |
Lsi06g01306 | 300 | PANTHER | WAT1-RELATED PROTEIN | 31 | 147 | IPR030184 | GO:0016021|GO:0022857 | |
Lsi06g01306 | 300 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 188 | 268 | - | - | |
Lsi06g01306 | 300 | Pfam | EamA-like transporter family | 37 | 148 | IPR000620 | GO:0016020|GO:0016021 | |
Lsi06g01306 | 300 | Pfam | EamA-like transporter family | 192 | 263 | IPR000620 | GO:0016020|GO:0016021 | |
Lsi06g01306 | 300 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 69 | 148 | - | - | |
Lsi06g01306 | 300 | PANTHER | WAT1-RELATED PROTEIN | 147 | 197 | - | - | |
Lsi06g01306 | 300 | PANTHER | WAT1-RELATED PROTEIN | 196 | 273 | - | - | |
Lsi06g01306 | 300 | PANTHER | WAT1-RELATED PROTEIN | 31 | 147 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g01306 | Lsi-Chr6:23624029 | Lsi01g01762 | Lsi-Chr1:16447996 | 5.39E-42 | dispersed | |
Lsi06g01306 | Lsi-Chr6:23624029 | Lsi08g01356 | Lsi-Chr8:21887221 | 2.52E-82 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01306 | - | - | cmo:103494154 | 451.055 |