Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01307 ATGACTGATAGCGCTAAATCAATTCTCGAAGAGGAGACTTCGAAGCTCGAAACCAAGTCCAAGCGCGGCACAGATGTGGAAGATGATGATATTACTATGAAGAAGTTTAAAACAGAAGCTTCTGCCGATGAAACTGGAGTCTGTACCGGTAGAAACTTGGAAGCTGTTAATGGTGATGAAGAACTTAAGGTCATCAAGAGGGGAGTCGAGTTTGAAATTGAAGCGGATGCGGCCGAGGATAAAGGGTCTAGGCATACAATGGAAGATGCCTCGGTTTTGCTCTTGGATGCAAGCTTGGATTTTCCTGGGAAATTGAGATGTGCACATTTTGCTATCTATGATGGACACGGGGGTCGGTTAGCTGCTGAGCACGCTCAAAAGCATTTGCATAAGAATGTTCTCTCGGCCGGGTTACCACGGTTCCGGAAAACGGATGAGTCTCTTCTCCAAGAAAGTTCTGCAGGGGGATGGCAGGATGGTGCTACTGCTGTTTGCGTTTGGGTCTTAGGTCAAACAGTTTTTGTTGCTAATGTTGGTGATGCTAAAGCAGTTGTGGCCCGATCTTTGACTACTGATAAATCGACAAATAATCCTAATGGTAAAAGCCCTTTAAAGGCTATCGTTTTGACAAGGGAACATAAGGCAATCTACCCACAGGAGAGAGCTCGCATTCAAAAGGCTGGTGGTGTTGTTGGTTCAAATGGTCGATTGCAGGGTCGTCTTGAAGTTTCTCGGGCATTCGGAGATCGACAATTTAAAAAGTTGGGCGTTATCGCAACTCCAGACATTCATTCTTTTGAATTGACTGATAGGGAGCATTTTATCATTCTCGGATGTGATGGACTTTGGGGGGTTTTTGGACCAAGTGATGCCGTTGATTTTGTCCAGAAATTATTGAAGGATGGCTTGCCCATAGCATCAATAAGTCGACGTCTTGTGAGGGAAGCAATTCGTGAGCGGCGCTGCAAAGATAACTGTACCGCAATTGTCATTGTCTTCAGGCCCAAATAA 1011 45.2 MTDSAKSILEEETSKLETKSKRGTDVEDDDITMKKFKTEASADETGVCTGRNLEAVNGDEELKVIKRGVEFEIEADAAEDKGSRHTMEDASVLLLDASLDFPGKLRCAHFAIYDGHGGRLAAEHAQKHLHKNVLSAGLPRFRKTDESLLQESSAGGWQDGATAVCVWVLGQTVFVANVGDAKAVVARSLTTDKSTNNPNGKSPLKAIVLTREHKAIYPQERARIQKAGGVVGSNGRLQGRLEVSRAFGDRQFKKLGVIATPDIHSFELTDREHFIILGCDGLWGVFGPSDAVDFVQKLLKDGLPIASISRRLVREAIRERRCKDNCTAIVIVFRPK 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23630470 23637747 - Lsi06G013070.1 Lsi06g01307 666037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01307 336 Gene3D - 65 336 IPR036457 -
Lsi06g01307 336 SMART PP2C_4 70 331 IPR001932 -
Lsi06g01307 336 CDD PP2Cc 78 333 IPR001932 -
Lsi06g01307 336 ProSiteProfiles PPM-type phosphatase domain profile. 74 333 IPR001932 -
Lsi06g01307 336 PANTHER INTEGRIN-LINKED KINASE-ASSOCIATED SERINE/THREONINE PHOSPHATASE 2C 14 330 - -
Lsi06g01307 336 PANTHER PROTEIN PHOSPHATASE 2C 14 330 IPR015655 GO:0004722|GO:0006470
Lsi06g01307 336 MobiDBLite consensus disorder prediction 1 28 - -
Lsi06g01307 336 Pfam Protein phosphatase 2C 78 322 IPR001932 -
Lsi06g01307 336 SUPERFAMILY PP2C-like 72 334 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01307 Lsi-Chr6:23630470 Lsi04g01361 Lsi-Chr4:21361522 3.97E-31 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01307 K17500 - csv:101216467 583.948