Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01308 GAGGCTGCCATTGACTTTCTGCTGGTGCCTTTAGGTCTCTGTTTGTTGGTTATCTATCACTTATGGCTGGTCCTTACCATATATCGGAATCCCAGACGGACGGTCATTGGCCTCAACGCCGAGTCACGTCGCCAATGGGTGTTTTGCATGATGACTGATCCATTGAAGAATGGTGTTTTAGCCGTTCAGACAATACGAAACAACATAATGGCATCTACACTTTTAGCAACAACAGCAATAACTCTCAGTTCGTTAATTGGTGTTTTTGTGAGCAGCTCATCGGACATGAGTAATGCAAAACTGCATCTAATTTATGGCAACAAGTCTGCCCTTTGTACTTCAATCAAGTACTTCTCAATCTTGCTGTGCTTCCTTGTTGCTTTTCTATGCAATGTGCAGTCAATAAGATATTATGCTCATGTAAGTTTCTTGGCCACTGTTCCTACATGGAGAGATCAGAAAGAGTCTATTCAGTATGTTGCTAGAAACTTGAATCGAGGCAGCCACTTCTGGTCCGTCGGATTGCGAGCATTCTACTTCTCATTCCCTCTCTTTCTCTGGATTTTTGGGCCAATTCCTATGTTTGCTTGTTGCTGTATAATGTTATGTATTCTTTATTTCTTGGACACAACTACCAGTTTTACGCGGCAGCTTCACAGTCGCTCATTGAAGGAGGACGAGGAAGTTGATCTGGAATCGCCTCGTCAAGCA 711 43.18 EAAIDFLLVPLGLCLLVIYHLWLVLTIYRNPRRTVIGLNAESRRQWVFCMMTDPLKNGVLAVQTIRNNIMASTLLATTAITLSSLIGVFVSSSSDMSNAKLHLIYGNKSALCTSIKYFSILLCFLVAFLCNVQSIRYYAHVSFLATVPTWRDQKESIQYVARNLNRGSHFWSVGLRAFYFSFPLFLWIFGPIPMFACCCIMLCILYFLDTTTSFTRQLHSRSLKEDEEVDLESPRQA 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23639476 23642348 + Lsi06G013080.1 Lsi06g01308 666038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01308 237 PANTHER OS01G0683700 PROTEIN 3 234 - -
Lsi06g01308 237 Pfam Protein of unknown function, DUF599 7 212 IPR006747 -
Lsi06g01308 237 PANTHER OS02G0292800 PROTEIN 3 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01308 - - - csv:101216222 461.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00214 Lsi06g01308 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01308 Lsi-Chr6:23639476 Lsi08g01110 Lsi-Chr8:19746142 1.01E-44 dispersed
Lsi02g00214 Lsi-Chr2:1768875 Lsi06g01308 Lsi-Chr6:23639476 1.28E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g271 . . . Bda15g00501 Bpe12g00706 . . . Cmo13g01044 . Cma10g00314 . Car10g00297 . . . . Bhi02g00107 . . . Hepe09g0366 . . . . . . . . . Cone2ag0743 . . . Lsi02g00214 Csa01g00697 . Cme12g01850 Blo13g00182 . . . . . . Bma08g00044 Sed01g1749 Cmo10g00337 . Cma13g01006 Cma18g00055 Car13g00841 Car18g00049 . . Bhi08g01265 Tan05g2224 Cmetu12g0059 Lac10g0268 . . . . . . . . . . Lsi06g01308 Csa01g00407 Chy02g02337 Cme02g01711
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001251 3 5 2 2 2 2 5 1 2 1 1 2 3 3 3 3 1 3 2 1 3 3 3 3 2 1 3 4 4 3 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01308 Lsi_Chr06 FPKM 8.475065 3.764842 2.236977 5.271795 6.98697 4.626441 7.975863 1.630146 0.980719 0.953485