Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01313 ATGATGGATCCACCACCTCCAGCCAGTGCAACAACGGCCGCCGCCGCTAACTTTGCAGCGACCACCATGCAGCAGCACAACAACTACCAGGATTCCATTGAATCCTCACCTCGTTCCCACAATGCCGATTGGGACGATCCTCTCCCGCCAGTTCCCGGCGCCAAGCTCCGCCTCATGTGCAGCTATGGCGGCCACATTATCCCTCGTCCTCACGATAAATCCCTCTGCTATGTCGGCGGCGACACTCGCATTGTCGTCGTCGACCGCCATTCCTCTCTTTCTGACCTCTGTATGCGCCTCTCTCGAACCCTCCTTAATGGCCGCCTATTCACCCTCAAGTACCAACTCCCTCTTGAGGATCTCGATTCCTTAATCTCCATTGCAACGGATGAAGATCTCGAGAACATGATTGAAGAATATGATCGAATCACCATGGCTTCGCCTTCAAAACCTTTGCGAATTCGTTTGTTCCTCTTCTTCACTAAGCCTGAAACCGCGGCTTCGATGGGTTCGTTGCTGGACGATGCGAAACACGAAACGTGGTTCGTTGATGCCCTAAATAACTCTGCGGGTATGATTCCAAGAGGGCTTTCCGATTCGGCTACTATGGAATGTATGGTGAATCTTGACGCGGTTCATGCGAGTGATTCCTGTAATGATTTGGAAAATCAAAGTCATGATTCTTTAGGGCATATTGACAAACAAGTTGTGAAGAATAGTAATTCAGCTCAAGATGTGCAATCGATTCCTGATTCTCCTGCTGTGGAAAATGATTCTTCGTTTGGTTCGTCTTCTTCGGTGCCGTCAATGTCCAATTTGCCGCCGATACGTGTCCGTGTGGAAGAGGCGGAGGGCAGAGTTCAAGATCCGAAGGTGGGATTAGAGGAGCAGTTTGGACAGATGAATTTTGGTGTTCCTCCAATTCCTACGGCGTTGGCTGCTGTAGCAACTATTCCATTGGGTGTTATTTCAAATCATGAAAATGCTAATCGGGTCTTTCTCGACGATGAGAGACCGGACCAGGCCGGTACGGTGGCGTTTCGAAAGCCTCCATTGCCATTGCAGACCTTGCAAAACAGGGGTGTTGCCAGTCCTATTGTCAGCGGTGGTTATGGTCTACCGTCGCCGGATTCTGTTGCTAGCGATAGTAGCATAGCATCTGCAAATTCTCAGTCCAAACCCGTATATTTTCAAGACCAAATTATGAGAGACAACACAGTTCCAGCCATTCCCATGGCAGAAAATGATGGTTTCCTAACAAGTCAACAAGTACCAATTCAACACCTTCATGATCCTGCTTATCTATTAACTTCACAATTAGATCAGAAGCAACCGCAACAACCGCAACAATTCGTCCACACCACCACCCATTACATCCATCACCATCACCCTGCAGCTGCGGCTTCGGGGCATGTCCCCGTTCAATCATATTATCATCCTATTTACACTCCAACACCATCTCAACAACAACTTCATCATCCAATTGATCAACAATATCCTGTCTATCTAATGCCCATTTCACAAACACAACCAACCTACAATATGTCTGTGCAATCAAGTCCTGCTGAAACTCCCTTGGCTGTACCCAACAGACAAGCATCAGCTAGTCCTGCCATGGTCTCTTCTCCAATTATTTACAATGACAGTAATCAACCATCCCTTTATCCTCAGAAAGTTACTGCAGCTATGCCAGAAATGGCAACGAGCGTGTACAGAACTGCGGTGACGTCGACTCCTCCTCCGTTATTACAGGTCCCTCACAACCAATTCCAGCAAAACCAATTCCAGCAACAATATATGGGTCTTCCCCAAATGAACTATCCATCTCAATCTATAGCTGTCGCTCCCTCTCCTTCGGGCACTGCTAACTATGGTTTTGATTACACTAATGCTCCACCCCATAACATCCAGGCTACCCCGATGGCTTCTCAGTACCAAACAATGACTCAGGCAGCAGCGGCTGCTCTATCCGATGCGTCTAGACAGCTTCCTGCAGATGGCGCACAGCAGCAGCAGATCAAGAATTCATAG 2031 48.15 MMDPPPPASATTAAAANFAATTMQQHNNYQDSIESSPRSHNADWDDPLPPVPGAKLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLSDLCMRLSRTLLNGRLFTLKYQLPLEDLDSLISIATDEDLENMIEEYDRITMASPSKPLRIRLFLFFTKPETAASMGSLLDDAKHETWFVDALNNSAGMIPRGLSDSATMECMVNLDAVHASDSCNDLENQSHDSLGHIDKQVVKNSNSAQDVQSIPDSPAVENDSSFGSSSSVPSMSNLPPIRVRVEEAEGRVQDPKVGLEEQFGQMNFGVPPIPTALAAVATIPLGVISNHENANRVFLDDERPDQAGTVAFRKPPLPLQTLQNRGVASPIVSGGYGLPSPDSVASDSSIASANSQSKPVYFQDQIMRDNTVPAIPMAENDGFLTSQQVPIQHLHDPAYLLTSQLDQKQPQQPQQFVHTTTHYIHHHHPAAAASGHVPVQSYYHPIYTPTPSQQQLHHPIDQQYPVYLMPISQTQPTYNMSVQSSPAETPLAVPNRQASASPAMVSSPIIYNDSNQPSLYPQKVTAAMPEMATSVYRTAVTSTPPPLLQVPHNQFQQNQFQQQYMGLPQMNYPSQSIAVAPSPSGTANYGFDYTNAPPHNIQATPMASQYQTMTQAAAAALSDASRQLPADGAQQQQIKNS 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23710920 23713330 + Lsi06G013130.1 Lsi06g01313 666043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01313 676 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 2 671 - -
Lsi06g01313 676 CDD PB1_UP2 59 159 - -
Lsi06g01313 676 PANTHER OS05G0427100 PROTEIN-RELATED 2 671 - -
Lsi06g01313 676 MobiDBLite consensus disorder prediction 239 272 - -
Lsi06g01313 676 Gene3D - 75 159 - -
Lsi06g01313 676 MobiDBLite consensus disorder prediction 657 676 - -
Lsi06g01313 676 ProSiteProfiles PB1 domain profile. 55 159 IPR000270 GO:0005515
Lsi06g01313 676 SMART PB1_new 70 159 IPR000270 GO:0005515
Lsi06g01313 676 MobiDBLite consensus disorder prediction 239 273 - -
Lsi06g01313 676 Pfam PB1 domain 71 159 IPR000270 GO:0005515
Lsi06g01313 676 SUPERFAMILY CAD & PB1 domains 71 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01313 - - - csv:101210340 1098.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00420 Lsi-Chr3:4772816 Lsi06g01313 Lsi-Chr6:23710920 3.38E-28 dispersed
Lsi06g01313 Lsi-Chr6:23710920 Lsi10g01517 Lsi-Chr10:19440262 2.68E-25 dispersed
Lsi01g00368 Lsi-Chr1:3255036 Lsi06g01313 Lsi-Chr6:23710920 5.81E-17 transposed
Lsi03g00660 Lsi-Chr3:8375277 Lsi06g01313 Lsi-Chr6:23710920 8.29E-34 transposed
Lsi08g01046 Lsi-Chr8:19020030 Lsi06g01313 Lsi-Chr6:23710920 1.74E-38 transposed
Lsi04g00220 Lsi-Chr4:2310267 Lsi06g01313 Lsi-Chr6:23710920 7.83E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g275 . . . . . . . . . . Cma10g00310 . Car10g00295 Car11g00266 . . Cpe04g01389 . . . . . . . Cla06g01447 Cam06g1600 Cec06g1662 Cco06g1656 Clacu06g1565 Cmu06g1518 Cre06g2329 . Cone16ag0553 Cone13ag0315 . . . . . . . . . . . . . . Cmo10g00335 Cmo11g00297 . . . . . . . . . . . . . . . . . . . . Lsi06g01313 Csa01g00403 Chy02g02346 Cme02g01723
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009839 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01313 Lsi_Chr06 FPKM 0.0 0.278168 0.0 0.160765 0.0 0.0 0.0 0.46326 0.548466 0.61633