Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01315 ATGAGTTCCACTGGGTTTTTTCTGCAATTGAAATCTAACGCTGCGTCTATATATTCTCCGTTGTTCGACTCTCGGAGCCACCGGAAGGGGAAAACATCGATACCCATTTCGCGGCTGTGCGTGAAGATGATGGCGGCGACGGCACCGGCGGATGCCAGAACGAGCTTTGGGTTCAAGAATTTGATGGAAACGTTCACTGTGAATGTGCAGAGAGCAGAGAATAGGGCACTGAATGTTCCATTAATTGAGCCATTTACGATTGCATCTTCGAGGCTTGAAATGGTGGAGAATGTAGCGATAAGGATCGAATTGAGTAATGGGAGTGTTGGATGGGGCGAGGCGCCGATTTTGCCTTTTGTCACTGCGGAAGATCAGCCTACCGCCATGGCGAAGGCCGAGGAGGTCTGTGAGTTACTGCGACAGAGACCGCCGAGTAGTTTGGGCTCAGCGATGTTTCAGATCAGCGAGGCTCTTCCTGGACATGAATTTGCTTCTGTTAGAGCAGGAGTTGAGATGGCGTTGATTGATGCAGTTGCTAACAGCATTAACATACCCCTATGGAGGCTTTTTGGTGGAGTTTCGGACAGTATAACCACGGATATAACAATTCCTATTACTTCTGCCTCTAATGCTGCCAAATTGGCTGCAAAATATCGCGATCAAGGATTCAAGACGTTGAAGCTGAAGGTGGGAAAGGACCTAAAAGCTGATATTGAAGTTCTTCAGAGCATCAGAATGGTCCATCCGGGTTGCGAATTTATACTGGATGCTAATGAGGGATATGACACAGAGGAGGCTATTCAAGTTCTTGAAAAATTACATGAATTGGGGGTGACTCCTACTCTATTTGAGCAACCAGTTCATAGAGACAACTGGGAGGGTCTTGGAAATGTTAGTCGTATCGCTCGAGATAAGTATGGGGTATCTGTTGCAGCTGATGAGAGCTGCCGGAGTGTAAATGATGTTAAGAGAATAGTGGAAGGGGATCTTGCAGATGTTATAAATATTAAGCTGGCCAAAGTTGGAGTTTTGGGGGCCATTGAGATTATTGAAATAGCAAGGGCTTCAGGACTCACTTTAATGATTGGTGGTATGGTTGAAACCAGACTTGCCATGGGCTTTTCTGGTCATCTTGCTGCTGGCCTTGGGTGTTTCAAATACATTGACTTAGATACACCACTTTTGTTGTCAGAAGATCCAGTTCATGGGGGTTATGAAGGAGTGATATTATTGATATCAAAATCAGATGTAGTAATAATGGTGGAAGGAGCAGAAGTGAGCTGCAACCCAATGCAAATGAGCCCTTGTATGAGCTCAATCATATCAGGAACTACACCATCAAAGCAGTGCTGCAGCAAGATCAAAGAGCAGAAGCCCTGCCTCTGTGGTTACCTCAAAAACCCTTTTCTTAAGAACTTTGTTGATTCACCAAATGCAAGAAAAGTAGCAAATGACTGTGGAACTCCTTTCCCAACTTGCTGA 1482 45.28 MSSTGFFLQLKSNAASIYSPLFDSRSHRKGKTSIPISRLCVKMMAATAPADARTSFGFKNLMETFTVNVQRAENRALNVPLIEPFTIASSRLEMVENVAIRIELSNGSVGWGEAPILPFVTAEDQPTAMAKAEEVCELLRQRPPSSLGSAMFQISEALPGHEFASVRAGVEMALIDAVANSINIPLWRLFGGVSDSITTDITIPITSASNAAKLAAKYRDQGFKTLKLKVGKDLKADIEVLQSIRMVHPGCEFILDANEGYDTEEAIQVLEKLHELGVTPTLFEQPVHRDNWEGLGNVSRIARDKYGVSVAADESCRSVNDVKRIVEGDLADVINIKLAKVGVLGAIEIIEIARASGLTLMIGGMVETRLAMGFSGHLAAGLGCFKYIDLDTPLLLSEDPVHGGYEGVILLISKSDVVIMVEGAEVSCNPMQMSPCMSSIISGTTPSKQCCSKIKEQKPCLCGYLKNPFLKNFVDSPNARKVANDCGTPFPTC 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23725086 23731069 + Lsi06G013150.1 Lsi06g01315 666045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01315 493 SUPERFAMILY Enolase C-terminal domain-like 191 404 IPR036849 -
Lsi06g01315 493 Gene3D - 183 405 IPR036849 -
Lsi06g01315 493 CDD nsLTP2 428 493 IPR033872 GO:0006869
Lsi06g01315 493 Pfam Enolase C-terminal domain-like 213 392 IPR029065 -
Lsi06g01315 493 Pfam Probable lipid transfer 424 488 IPR016140 -
Lsi06g01315 493 Pfam Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 79 191 IPR013341 -
Lsi06g01315 493 SMART aai_6 428 493 IPR016140 -
Lsi06g01315 493 PANTHER O-SUCCINYLBENZOATE SYNTHASE 53 412 - -
Lsi06g01315 493 PANTHER O-SUCCINYLBENZOATE SYNTHASE-RELATED 53 412 - -
Lsi06g01315 493 SFLD Enolase 70 405 - -
Lsi06g01315 493 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 427 493 IPR036312 -
Lsi06g01315 493 SFLD muconate cycloisomerase 70 405 - -
Lsi06g01315 493 Gene3D - 76 182 IPR029017 -
Lsi06g01315 493 SMART MR_MLE_2 208 302 IPR013342 -
Lsi06g01315 493 Gene3D - 426 493 IPR036312 -
Lsi06g01315 493 SUPERFAMILY Enolase N-terminal domain-like 68 192 IPR029017 -
Lsi06g01315 493 CDD L-Ala-DL-Glu_epimerase 71 396 IPR034603 GO:0016855
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01315 - - - csv:101215507 732.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01315 Lsi-Chr6:23725086 Lsi07g00926 Lsi-Chr7:11142732 3.90E-23 dispersed
Lsi07g00931 Lsi-Chr7:11322357 Lsi06g01315 Lsi-Chr6:23725086 3.55E-14 dispersed
Lsi01g01912 Lsi-Chr1:23254364 Lsi06g01315 Lsi-Chr6:23725086 4.54E-15 transposed
Lsi03g00427 Lsi-Chr3:4832102 Lsi06g01315 Lsi-Chr6:23725086 2.21E-132 transposed
Lsi02g00208 Lsi-Chr2:1731472 Lsi06g01315 Lsi-Chr6:23725086 1.45E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g284 . . . . . . . . . . . Cma11g00289 . Car11g00263 . . Cpe04g01391 . . . . . . . Cla06g01449 Cam06g1602 Cec06g1664 Cco06g1658 Clacu06g1567 Cmu06g1520 Cre06g2331 . . . . . . . . . . . . . . . . . . Cmo11g00292 . . . . . . . . . . . . . . . . . . . . Lsi06g01315 Csa01g00401 Chy02g02348 Cme02g01725
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002956 1 2 1 1 1 2 3 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01315 Lsi_Chr06 FPKM 26.922247 32.775074 32.300751 34.560066 50.960369 44.109058 46.69054 42.965328 46.053799 45.213566