Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01316 ATGTTGGGAACTGCGTTGCAGTTTGGGGGAATCAAAGGTGAGGATCGGTTTTATATTCCGGTAAGGGCACGAAAGAATTATAATCAGCAAAAGCAATCGAGGAGACCTACCAAGACCGATGAAACTGAGAGCCCATCGAGTAAAGTTGTGGCTTCTACTATAAAGCCTTCTAAGCAATTAACTCCTCAGTCTAAGAGCAACTTAGAGAGATTCTTGGAGGCCACAAGGCCTTCAGTTCCAGCGCAGTATTTCTCTAAGACAACTATGAGGGATTGGAGGACTTGTGACATTGAGTTTCAACCTTATTTCATTCTGAATGATCTGTGGGAGTCTTTCAAGGAGTGGAGTGCATATGGCGCTGGAGTTCCTTTAGTTCTTAATGGAGGTGATTCTGTTGTTCAATATTACGTTCCATATTTGTCTGGTATCCAAATATATGGTGAAGCTTCTGCACTGAGACCAGATTCTAACTCCAGGCTGGCTAGTGAGGACAGTGATCTTGACTCTTTTAGAGATACAAGCAGCGATGGAAGCATTGACTATGAGTTTGGAAAAATCTGTAACTTTTCTAGTGAACAGTGGGTTCATCACCATCTAGCTTGTGAAAACACACTGAAAATGAGAAATACGTCTTTAACTGATGAACATAGAACGATACAAGAAGGTTTTTCGAGTGATGATGCGGATGCAGGATATCATCGAAGTGGTTTGCTCTTTCAGTTTCTTGAGCATGATCTTCCTTATCAACGTGTACCATTGGCTGATAAAATATTTGAACTTGCTTTCCAATTTCCTGGTTTGAAAACGTTAAGAAGTTGTGATATCCTGTCAGCCAGCTGGGTCTCTGTAGCATGGTACCCTATTTACCGTATACCCACCGGTCCGACATTAAAAGATTTGGATGCTTGCTTCTTAACATATCATTCCCTTTCCACACCAGGTAATGGACATGGTCTGCCACCAGTAATGATATATCCAAAGGACATTGATGGTATCGCAAAGGTCTCCTTGCCTGTTTTTGGATTGGCTTCTTATAAGCTGAAAGGATCGATATGGGGGCAAAATGGCGTCAACGAGCATCAAACGGCAAATTCTCTCATGCAGGCAGCAGATAAGTGGCTGAGGAGCCTTCAGGTCGTTCAACCTGATTTTCAGTTCTTTGCATCACATGGGACATACTGGAGATGA 1188 42.51 MLGTALQFGGIKGEDRFYIPVRARKNYNQQKQSRRPTKTDETESPSSKVVASTIKPSKQLTPQSKSNLERFLEATRPSVPAQYFSKTTMRDWRTCDIEFQPYFILNDLWESFKEWSAYGAGVPLVLNGGDSVVQYYVPYLSGIQIYGEASALRPDSNSRLASEDSDLDSFRDTSSDGSIDYEFGKICNFSSEQWVHHHLACENTLKMRNTSLTDEHRTIQEGFSSDDADAGYHRSGLLFQFLEHDLPYQRVPLADKIFELAFQFPGLKTLRSCDILSASWVSVAWYPIYRIPTGPTLKDLDACFLTYHSLSTPGNGHGLPPVMIYPKDIDGIAKVSLPVFGLASYKLKGSIWGQNGVNEHQTANSLMQAADKWLRSLQVVQPDFQFFASHGTYWR 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23739356 23743867 - Lsi06G013160.1 Lsi06g01316 666046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01316 395 PANTHER T15D22.8 1 395 - -
Lsi06g01316 395 MobiDBLite consensus disorder prediction 23 55 - -
Lsi06g01316 395 Pfam Protein of unknown function (DUF789) 66 387 IPR008507 -
Lsi06g01316 395 PANTHER DUF789 FAMILY PROTEIN 1 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01316 - - - csv:101215266 707.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01316 Lsi-Chr6:23739356 Lsi09g00622 Lsi-Chr9:6862254 2.57E-132 dispersed
Lsi02g00276 Lsi-Chr2:2340063 Lsi06g01316 Lsi-Chr6:23739356 3.17E-14 transposed
Lsi02g00290 Lsi-Chr2:2480434 Lsi06g01316 Lsi-Chr6:23739356 2.05E-55 transposed
Lsi05g01568 Lsi-Chr5:23443911 Lsi06g01316 Lsi-Chr6:23739356 2.14E-98 transposed
Lsi04g00229 Lsi-Chr4:2352010 Lsi06g01316 Lsi-Chr6:23739356 2.35E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g286 . . . . . . . . . . . Cma11g00287 Car10g00293 Car11g00261 . . Cpe04g01392 . . . . . . . Cla06g01451 Cam06g1605 Cec06g1666 Cco06g1660 Clacu06g1570 Cmu06g1522 Cre06g2334 . . . . . . . . . . . . . . . . . Cmo10g00330 Cmo11g00290 . . . . . . . . . . . . . . . . . . . . Lsi06g01316 Csa01g00399 Chy02g02349 Cme02g01726
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001555 1 3 2 1 1 2 4 2 2 2 2 2 3 2 3 4 2 2 4 2 2 2 2 2 2 2 2 4 6 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01316 Lsi_Chr06 FPKM 25.520517 25.55813 10.069715 11.548909 21.065998 18.994268 19.746902 10.090995 11.187572 9.711603