Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01317 ATGATATCTCTGACTGCTATACGACTGCCACGTGTCTTCCGTCAGGCGATGTGGGTAGTTGTTGAAGAACCGCTCCAAACCCTTTTCAAACCCATTCTTATTTGCTTCTTTACATTCATCTTCTCGATCTCAGCTTCTGAAACATTCAAGGACTGTGCGCCTAGAAATTGTGGACATGGCCCTGTTATAAAATACCCCTTTTGGATAGATGGTGAGCAAGATTCTTCCTGTGGATACCCAGATTTCAAAATCAAATGCTTTAGAGGTTTCCCAGTTCTTGAAATCTCCGATGAAGTTTTAGTCGTCAAAGACATTTTTTACCAAAGCAATTCGTTTTTGTTGGTCAGTGCTACAGCTTACAACGATGAACATTCATGCCCATCTCCCTCACATGACATTAGCCTAGATGGAAAACCATTCCATTATACTTCAGATAATGAAGATTTCTTCTTCTTCTATGGTTGCCCATTAGTTCACAAGGATTATATCTATGAACTTAACTGTACTACCAACAAAACCCAGTTTTCTTTTGCGACTTTCCACAAGGATTTTCTGGAGTTGGAGGAATTTCCTTTACAGTCATGTCGTTCTTCGATTCGTGTTCCTATTCGTAAGAACTCGACTGCTAATTTAGCTGATTTTAGGGACATGAGTTACGTTAAGATTTGGAAGAGGGGTTTTGTTCTGAATTGGACTGCACAAGACTGCAGCAAATGCGAGCAAAGTGGTGGCTATTGTAGATTGGAAAACAATAAGTTTGTTTGTTCTTGTAGCGATGGAACTCATTCCAATAGCTGCAAACAGGAAAAAAGCAAGACCAGAACAAAGATTATCATTGGGATATGCACTGGTTTTGGAGCCTTGCTTTTAACCTTTCTTGTTCTTGGCATCTGCTACCGATGGCGCCAACTTCGTCAAAGAAGGTCTCACATGTTGCCGTATGTGCAACGAAGCATTCCATCGAATCCGTCGAATCCCCCAAATCCTTCTTCTGTGGAAGAAGTTGAGAATGGAGGTACCTACTTGGGCGTTCACCTCTTCTCCTATAAAGAACTTGAAGAAGCGACAAACCATTTTGACTCCAACAAAGAGCTTGGAGATGGAGGTTTTGGCACAGTGTATTATGGCGTACTCAAAGATGGGCGTGCCGTTGCTGTCAAACGGTTGTTTGAAAGCAATTTTAAGAGAGTTGAGCAGTTCATGAATGAGGTGGAGATCCTTGCTCGTTTGCGCCACCGCAACCTTGTTTCGCTTTACGGTTGCACCTCACGCAGTAGCCGTGAGCTTCTGCTTGTGTACGAATATGTCCCAAATGGCACAGTGGCTGATCACCTCCATGGAAAACTAGCAAAGCCTGGGAAGCTTCCATGGTCTACAAGAATGAAGATTGCTATAGAGACTGCAAGTGCTTTGGTGTATCTCCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAACATTCTCCTCGACAACAACTACTGCGTTAAAGTAGCTGATTTCGGATTGTCCCGTCTCTTCCCGCTCGATGTCACACACGTTTCAACCGCTCCACAAGGCACTCCTGGCTATGTTGATCCAGAGTACCATCAGTGCTACCAACTCTCTGACAAAAGCGATGTCTTCAGCTTTGGTGTGGTACTTGTTGAACTCATGTCCTCAATGCCTGCTGTTGACATCACAAGGCATAGACAAGAGATCAACCTATTCAACATGGCCATCAATAAGATCCAAAGCCGCACGTTACACGAACTCGTCGACCCGTCGCTCGGTTTCGAATCAGACTACAAAATCCAAGACATGATAACCAGCGTAGCCGAGTTGGCATTTCGATGCCTGCAGAGCATGAAAGACGAAAGACCAACAATGATGGAAGTTCTCGACACTCTTAACATCATACAGAAGCAGAACGCCGAGAAGGCGACAGATCGAGAGGCCGACATTTCAGACGATGCTGTGTTGCTAAAGAATGGCTATGGATCTTCTCCAAGTTCCATATCTGTATCTTGGGTTAGCAGTAACACCTCAACAGCAACTAATGAAACCATCAGCTCT 2058 43.97 MISLTAIRLPRVFRQAMWVVVEEPLQTLFKPILICFFTFIFSISASETFKDCAPRNCGHGPVIKYPFWIDGEQDSSCGYPDFKIKCFRGFPVLEISDEVLVVKDIFYQSNSFLLVSATAYNDEHSCPSPSHDISLDGKPFHYTSDNEDFFFFYGCPLVHKDYIYELNCTTNKTQFSFATFHKDFLELEEFPLQSCRSSIRVPIRKNSTANLADFRDMSYVKIWKRGFVLNWTAQDCSKCEQSGGYCRLENNKFVCSCSDGTHSNSCKQEKSKTRTKIIIGICTGFGALLLTFLVLGICYRWRQLRQRRSHMLPYVQRSIPSNPSNPPNPSSVEEVENGGTYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVYYGVLKDGRAVAVKRLFESNFKRVEQFMNEVEILARLRHRNLVSLYGCTSRSSRELLLVYEYVPNGTVADHLHGKLAKPGKLPWSTRMKIAIETASALVYLHASEIIHRDVKTNNILLDNNYCVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELMSSMPAVDITRHRQEINLFNMAINKIQSRTLHELVDPSLGFESDYKIQDMITSVAELAFRCLQSMKDERPTMMEVLDTLNIIQKQNAEKATDREADISDDAVLLKNGYGSSPSSISVSWVSSNTSTATNETISS 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23754335 23759505 + Lsi06G013170.1 Lsi06g01317 666047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01317 686 ProSiteProfiles Protein kinase domain profile. 359 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01317 686 SMART serkin_6 359 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01317 686 Pfam Wall-associated receptor kinase galacturonan-binding 52 115 IPR025287 GO:0030247
Lsi06g01317 686 Pfam Protein kinase domain 360 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01317 686 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Lsi06g01317 686 Gene3D Phosphorylase Kinase; domain 1 332 435 - -
Lsi06g01317 686 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 33 674 IPR044652 -
Lsi06g01317 686 Pfam Wall-associated receptor kinase C-terminal 172 260 IPR032872 -
Lsi06g01317 686 MobiDBLite consensus disorder prediction 660 686 - -
Lsi06g01317 686 CDD STKc_IRAK 365 634 - -
Lsi06g01317 686 SUPERFAMILY Protein kinase-like (PK-like) 344 641 IPR011009 -
Lsi06g01317 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Lsi06g01317 686 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 33 674 - -
Lsi06g01317 686 Gene3D Transferase(Phosphotransferase) domain 1 436 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01317 - - - cmo:103494139 1173.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00194 Lsi06g01317 CCT
Lsi02g00194 Lsi06g01317 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00203 Lsi-Chr2:1696135 Lsi06g01317 Lsi-Chr6:23754335 2.56E-44 dispersed
Lsi02g00205 Lsi-Chr2:1712814 Lsi06g01317 Lsi-Chr6:23754335 0 dispersed
Lsi06g01317 Lsi-Chr6:23754335 Lsi07g00689 Lsi-Chr7:7422634 8.64E-153 dispersed
Lsi04g00487 Lsi-Chr4:4513122 Lsi06g01317 Lsi-Chr6:23754335 8.68E-90 transposed
Lsi02g00194 Lsi-Chr2:1670999 Lsi06g01317 Lsi-Chr6:23754335 4.58E-131 wgd
Lsi04g00234 Lsi-Chr4:2377209 Lsi06g01317 Lsi-Chr6:23754335 3.36E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g289 . . . Bda15g00513 . Bpe13g00359 Bma06g00049 . Cmo13g01055 . Cma10g00308 Cma11g00286 Car10g00292 Car11g00260 . . . . . . . . . . Cla06g01453 . . . . . . Cone11ag0305 Cone18ag1190 Cone2ag0439 Cone16ag0560 Lsi02g00194 Csa01g00680 . Cme12g01864 . . . . . Bpe15g00530 Bma03g00899 Bma08g00058 . Cmo10g00329 Cmo11g00288 Cma13g01013 . Car13g00846 . . . Bhi08g01255 . . . . . . Cla04g01079 . . . . . . Lsi06g01317 Csa01g00398 Chy02g02350 Cme02g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000799 2 5 1 3 2 2 3 4 2 2 2 2 4 3 3 4 2 1 3 2 3 1 2 3 1 3 1 1 3 3 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83743 PF00069 Pkinase 4.40E-49 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01317 Lsi_Chr06 FPKM 10.961071 19.462685 5.973284 6.256832 11.821824 5.767402 9.716706 6.030485 4.040596 7.031416