Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01318 ATGACGACTTCCAATCCCAAACTCCAAATGCATTTCAAATCCCTTCTCTCTCCTCTCCTCCTCTTCGCCGCCGGCCTCGCCGCCGGCTTCACTCTTACTCTCTTCATCTTCCCTTTCCCTTTCTTCCAATTTTCCTCTCCTCTCTCCCTCCGTTTCACCTTCAGCCAATTCCAACTCCCCTCTCCCTCTCCTCCGCCGCCGCCGCGGGTCGGATTGAAAGAGTTTTTGAAGCCTCCCCCGGCACTCCACGACATGACGGAGGAGGAGCTTCTGTGGAGGGCCTCCCTGGTTCCTCGTCGGATTCCGAACTTTCCGACGACGGAGAAGTCACGGCGGAAGATCGCGTTCTTGTTTCTGACGAAAGACGGAGTCAGTTTGGCACCGCTTTGGGAACTGTTCTTTAAAGGTCACCGTGGGCTTTACTCCATTTACGTCCACCGGAGTCCTTCTTCCAACGCCACCGTCGCTCCCTCCTCTGTTTTCTATGGCCGCTCAATCCCCAGTAAGGGAGTGAAGTGGGGAGAACCAAGCATGATGGAGGCTGAGCGGCGGCTACTGGCTAACGCATTATTAGATTTTTCTAACCAAAGATTCATCCTTCTCTCCGAATCCTGCATCCCACTCTTCAATTTCTCCACCATTTACAATTACTTAATGGCCTCCAAATCCACTTTTATTGAGGCCTACGATCTCCCAGGCCCAGTGGGCCGAGGCCGCTACAGCCCAAAAATGCGGCCCACAATCAAGCTCCAACAATGGCGCAAGGGCTCCCAATGGTTCGAAATGGACCGAATCATCGCCTCCCAAGTCGTCTCCGACCAGAAATTCTTCCCCGTTTTCCAGAAATTCTGCAAACCCTCTTGTTACATGGACGAGCACTACCTTCCCACCTTCGTCGGAATCAGATTCTCCAAGAACAACTCCAACCGGACCTTGACTTGGGTCGACTGGTCCAGAGGCGGCGCCCACCCGACCCGGTTCATCAGAACCGATGTCAACGTTGGATTGCTTCAGAGGTTGAGGAATGGTAGCCACTGCGAGTACAATGGAGTTAAGACTAATCTCTGTCATTTGTTTGCTAGGAAATTCATGCCTAATTCTTTGAATAGACTCCTCATGTTTGCTCCTAAGCTCATGCAGTTTAATCATTAA 1152 51.91 MTTSNPKLQMHFKSLLSPLLLFAAGLAAGFTLTLFIFPFPFFQFSSPLSLRFTFSQFQLPSPSPPPPPRVGLKEFLKPPPALHDMTEEELLWRASLVPRRIPNFPTTEKSRRKIAFLFLTKDGVSLAPLWELFFKGHRGLYSIYVHRSPSSNATVAPSSVFYGRSIPSKGVKWGEPSMMEAERRLLANALLDFSNQRFILLSESCIPLFNFSTIYNYLMASKSTFIEAYDLPGPVGRGRYSPKMRPTIKLQQWRKGSQWFEMDRIIASQVVSDQKFFPVFQKFCKPSCYMDEHYLPTFVGIRFSKNNSNRTLTWVDWSRGGAHPTRFIRTDVNVGLLQRLRNGSHCEYNGVKTNLCHLFARKFMPNSLNRLLMFAPKLMQFNH 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23759581 23764459 - Lsi06G013180.1 Lsi06g01318 666048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01318 383 Pfam Core-2/I-Branching enzyme 114 340 IPR003406 GO:0016020|GO:0016757
Lsi06g01318 383 PANTHER CORE-2/I-BRANCHING ENZYME 7 381 - -
Lsi06g01318 383 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 7 381 IPR044174 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01318 - - - csv:101209845 612.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01318 Lsi-Chr6:23759581 Lsi07g00551 Lsi-Chr7:5846349 1.97E-117 dispersed
Lsi10g00103 Lsi-Chr10:1606718 Lsi06g01318 Lsi-Chr6:23759581 4.76E-36 dispersed
Lsi06g00644 Lsi-Chr6:9519947 Lsi06g01318 Lsi-Chr6:23759581 8.88E-45 transposed
Lsi09g00618 Lsi-Chr9:6809593 Lsi06g01318 Lsi-Chr6:23759581 1.67E-134 transposed
Lsi02g00190 Lsi-Chr2:1612454 Lsi06g01318 Lsi-Chr6:23759581 9.64E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g295 . . . . . . . . Cmo13g01057 . . . . . . . . . . . . . . . Cla06g01454 Cam06g1608 Cec06g1669 Cco06g1664 Clacu06g1573 Cmu06g1525 Cre06g2336 . . . . . Csa01g00673 . . . . . . . . . . Sed12g2090 . . Cma13g01017 . . . . . Bhi08g01243 Tan05g2257 Cmetu02g1431 Lac10g0247 Hepe07g2380 . . Cla04g01081 Cam04g1133 Cec01g1643 Cco01g1692 Clacu04g1161 Cmu04g1142 Cre01g1438 Lsi06g01318 . Chy02g02352 Cme02g01728
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002751 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01318 Lsi_Chr06 FPKM 31.603525 29.824179 26.192818 28.562687 26.459284 27.902796 28.805336 28.602629 29.454327 30.474371