Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01320 | ATGGCGACGCCGTTGACAGGGCTACAGCACAGGGACGGTGGCGGAGGGGTGGCTTTTTTGGCTAATTCTGTAAATAAAATGGATTCCGCCTCGTCTCCGTCGTCGCCGAATGATTGTTTGAGGAGCTCCGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTCCACAAAGCAATTCGCAATGAGCTCGACACGCTTCACCGGCTGGCCATGGCGTTCGCTACCGGCCAGAGAGCTGATATTCGGCCGCTATTTGAACGATACCATTTTTTGAGATCGATTTACAAACACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCCCTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGTGAAAGCAATTTGTTTGATCATCTTTTTGAGCTTCTTAATTGTAATACACAACATGATGAAAGCTTCCCAAGGGAGTTAGCATCCTGCACTGGCGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGCTTTCATCATCTGTTTCACCTGATGAATTTCAGGATCTACAGAAATGTTTAATCAAGGTAGTCCCTGAGGAAAAGCTTCTCCAACAGGTCATATTTACTTGGATGGAAGCGAGAAGTTGTGACAATGCATCAACAAGTTGTTTTGGTGATTCTCTAGTTATATATCATACAGATCCTTCTACTGATACATCGAATCATGAAACCGGAAATGTAAATTGTGCTTGTGAATTGACCAGCCATGGAAAAAGAAAATACTTGGAGTCAAAATCTGAGACATTGGATTATGTGGCAACTCATCCAATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTGAGGAGGCTAGGAAGATACAACTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCATAGTATTGCCGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAGTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAGAGACAACGGGAATTATTGTATCAAAGCTTGTGCATGATGCCTTTGAAATTGATTGAACGTGTCTTGCCATGGCTGGTAGGATCAGTGAAAGAAGATGAAGCTAGAGATATTCTCAAGAACATTCAGTTGGCAGCTCCAGCTAAAGATACTGCTCTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAAGCTCGTAATAATGGTTTGTGCTTGTCTTCGAGAGCAGTTGGCTGTTGTGCAGTTAAAAGGCTTACTGACATTGAAGAAGACATTGTTCAATCATCTTGTTCATGTGCCCCTGCATTAGCTGCAAGGGAAGGTCCAAAATCAGATCCTGAAACTAGTGCTAATGTCAAGAGGCCAGCCATACGAAATGTACCGATGCCATGCAAAAGCTGTGATGGCCGTATTGCTTCTGAGACTGTTAATGTCCAGCAACAATGTTGTAGTGATCAGTCCTGCCATGTTCCAGCTTTAGGTGTAAACATCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCCATGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTCTTTTCATGGGAAACAGATTGCTCCTCTTCTGATGTTGGTTCCGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTAGTGATTGTGATGGGACATTTCTCCGGCAATTTATTGGAAGATTTCGTCTCCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCTCTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCGTATACGCTAGACCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTGTCCGAGATTTCACTCCTCCATGAAAGTTTGCATGAGGTTCCGTTGGATGAGAGTTCTTCCAGAAGTGTTGTTGGGTCTGTTAATGTGGTGGGGAAGGATTGTAATAGAAAGTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACTCTGGATCAGCATATATTTAGGGAAGAACTCGAACTTTGGCCTCTGTTTGGGAAACACTTCTCTGTGGAGGAGCAAGACAAAATAGTTGGCCGTATCATTGGAACCACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCGTGGGTAACATCAGCACTTACTCAGGACGAACAGAATACTCTGATGGATACGTGGAAGCAGGCCACAAAAAACACCATGTTCAATGAATGGCTCAATGAATGTTGGAGAGGGACTGCTTCGTCTACTTTAAATGGTGAAACATCGGAAGCTTGTATTGCCGAAAAAGATTCTGGGCTCATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATAAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCTCAAGCAAATGTAGAAGATAATTCCAATGGTGAAGATGTAGCAGGACGAACAGCATCTTTTCACTGTGCCGAAAAAAATGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACCTGTCGATTCTGTCATGACAATGTCAGTGATCACTCAATGGACAGGGCTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGATTTGCAATTGTTGCCTTGGGATAAAGCTGGAGAGCCATAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCCAGTGCAACAGTCCGACCTCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCGTACACTTGCAGCCATTATACCTGCCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCCTTGTTGGCTGCTGAGGAGCTGCCAGAAGAGTACAGGGATCGTTGCCAGGACATATTGTGCAATGACTGTGAGCGGAAAGGGCCATCGCGGTTCCATTGGCTATATCATAAATGTGGGTTTTGTGGATCATACAACACTCGAGTAATCAAGAATGAAACCACATCTGCTGATTGCCCCTCTTCCAATCAGTGA | 3633 | 42.64 | MATPLTGLQHRDGGGGVAFLANSVNKMDSASSPSSPNDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNCNTQHDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCLIKVVPEEKLLQQVIFTWMEARSCDNASTSCFGDSLVIYHTDPSTDTSNHETGNVNCACELTSHGKRKYLESKSETLDYVATHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRCLIENIQSAGASSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSVKEDEARDILKNIQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTDIEEDIVQSSCSCAPALAAREGPKSDPETSANVKRPAIRNVPMPCKSCDGRIASETVNVQQQCCSDQSCHVPALGVNIKNLGLSSIFTSKSMRSLSPSSCAPSLNSSLFSWETDCSSSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVPLDESSSRSVVGSVNVVGKDCNRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTLMDTWKQATKNTMFNEWLNECWRGTASSTLNGETSEACIAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGEDVAGRTASFHCAEKNVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCERKGPSRFHWLYHKCGFCGSYNTRVIKNETTSADCPSSNQ | 1210 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 23789810 | 23800065 | + | Lsi06G013200.1 | Lsi06g01320 | 666050 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01320 | 1210 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 31 | 1041 | - | - | |
Lsi06g01320 | 1210 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 1040 | 1206 | - | - | |
Lsi06g01320 | 1210 | CDD | Hr-like | 51 | 177 | - | - | |
Lsi06g01320 | 1210 | Pfam | Zinc-ribbon | 1137 | 1194 | IPR039512 | - | |
Lsi06g01320 | 1210 | Gene3D | nmb1532 protein domain like | 312 | 459 | - | - | |
Lsi06g01320 | 1210 | Gene3D | nmb1532 protein domain like | 46 | 196 | - | - | |
Lsi06g01320 | 1210 | CDD | RING-H2_Pirh2 | 1089 | 1132 | - | - | |
Lsi06g01320 | 1210 | SMART | ring_2 | 1090 | 1131 | IPR001841 | - | |
Lsi06g01320 | 1210 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1083 | 1134 | IPR013083 | - | |
Lsi06g01320 | 1210 | SUPERFAMILY | RING/U-box | 1089 | 1135 | - | - | |
Lsi06g01320 | 1210 | CDD | Hr-like | 662 | 822 | - | - | |
Lsi06g01320 | 1210 | ProSiteProfiles | Zinc finger CHY-type profile. | 1000 | 1070 | IPR008913 | GO:0008270 | |
Lsi06g01320 | 1210 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 1022 | 1089 | IPR017921 | - | |
Lsi06g01320 | 1210 | SUPERFAMILY | CHY zinc finger-like | 1000 | 1071 | IPR037274 | GO:0008270 | |
Lsi06g01320 | 1210 | PANTHER | CHY ZINC FINGER PROTEIN | 1040 | 1206 | - | - | |
Lsi06g01320 | 1210 | CDD | Hr-like | 313 | 441 | - | - | |
Lsi06g01320 | 1210 | Gene3D | nmb1532 protein domain like | 655 | 878 | - | - | |
Lsi06g01320 | 1210 | Gene3D | - | 1161 | 1205 | - | - | |
Lsi06g01320 | 1210 | ProSiteProfiles | Zinc finger RING-type profile. | 1090 | 1132 | IPR001841 | - | |
Lsi06g01320 | 1210 | Pfam | Hemerythrin HHE cation binding domain | 660 | 823 | IPR012312 | - | |
Lsi06g01320 | 1210 | Pfam | Hemerythrin HHE cation binding domain | 309 | 443 | IPR012312 | - | |
Lsi06g01320 | 1210 | Pfam | Hemerythrin HHE cation binding domain | 53 | 179 | IPR012312 | - | |
Lsi06g01320 | 1210 | PANTHER | CHY ZINC FINGER PROTEIN | 31 | 1041 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g01320 | Lsi-Chr6:23789810 | Lsi06g01496 | Lsi-Chr6:25414014 | 2.84E-06 | dispersed | |
Lsi04g00238 | Lsi-Chr4:2412687 | Lsi06g01320 | Lsi-Chr6:23789810 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01320 | K16276 | - | csv:101215023 | 2318.89 |