Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01320 ATGGCGACGCCGTTGACAGGGCTACAGCACAGGGACGGTGGCGGAGGGGTGGCTTTTTTGGCTAATTCTGTAAATAAAATGGATTCCGCCTCGTCTCCGTCGTCGCCGAATGATTGTTTGAGGAGCTCCGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTCCACAAAGCAATTCGCAATGAGCTCGACACGCTTCACCGGCTGGCCATGGCGTTCGCTACCGGCCAGAGAGCTGATATTCGGCCGCTATTTGAACGATACCATTTTTTGAGATCGATTTACAAACACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCCCTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGTGAAAGCAATTTGTTTGATCATCTTTTTGAGCTTCTTAATTGTAATACACAACATGATGAAAGCTTCCCAAGGGAGTTAGCATCCTGCACTGGCGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGCTTTCATCATCTGTTTCACCTGATGAATTTCAGGATCTACAGAAATGTTTAATCAAGGTAGTCCCTGAGGAAAAGCTTCTCCAACAGGTCATATTTACTTGGATGGAAGCGAGAAGTTGTGACAATGCATCAACAAGTTGTTTTGGTGATTCTCTAGTTATATATCATACAGATCCTTCTACTGATACATCGAATCATGAAACCGGAAATGTAAATTGTGCTTGTGAATTGACCAGCCATGGAAAAAGAAAATACTTGGAGTCAAAATCTGAGACATTGGATTATGTGGCAACTCATCCAATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTGAGGAGGCTAGGAAGATACAACTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCATAGTATTGCCGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAGTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAGAGACAACGGGAATTATTGTATCAAAGCTTGTGCATGATGCCTTTGAAATTGATTGAACGTGTCTTGCCATGGCTGGTAGGATCAGTGAAAGAAGATGAAGCTAGAGATATTCTCAAGAACATTCAGTTGGCAGCTCCAGCTAAAGATACTGCTCTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAAGCTCGTAATAATGGTTTGTGCTTGTCTTCGAGAGCAGTTGGCTGTTGTGCAGTTAAAAGGCTTACTGACATTGAAGAAGACATTGTTCAATCATCTTGTTCATGTGCCCCTGCATTAGCTGCAAGGGAAGGTCCAAAATCAGATCCTGAAACTAGTGCTAATGTCAAGAGGCCAGCCATACGAAATGTACCGATGCCATGCAAAAGCTGTGATGGCCGTATTGCTTCTGAGACTGTTAATGTCCAGCAACAATGTTGTAGTGATCAGTCCTGCCATGTTCCAGCTTTAGGTGTAAACATCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCCATGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTCTTTTCATGGGAAACAGATTGCTCCTCTTCTGATGTTGGTTCCGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTAGTGATTGTGATGGGACATTTCTCCGGCAATTTATTGGAAGATTTCGTCTCCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCTCTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCGTATACGCTAGACCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTGTCCGAGATTTCACTCCTCCATGAAAGTTTGCATGAGGTTCCGTTGGATGAGAGTTCTTCCAGAAGTGTTGTTGGGTCTGTTAATGTGGTGGGGAAGGATTGTAATAGAAAGTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACTCTGGATCAGCATATATTTAGGGAAGAACTCGAACTTTGGCCTCTGTTTGGGAAACACTTCTCTGTGGAGGAGCAAGACAAAATAGTTGGCCGTATCATTGGAACCACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCGTGGGTAACATCAGCACTTACTCAGGACGAACAGAATACTCTGATGGATACGTGGAAGCAGGCCACAAAAAACACCATGTTCAATGAATGGCTCAATGAATGTTGGAGAGGGACTGCTTCGTCTACTTTAAATGGTGAAACATCGGAAGCTTGTATTGCCGAAAAAGATTCTGGGCTCATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATAAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCTCAAGCAAATGTAGAAGATAATTCCAATGGTGAAGATGTAGCAGGACGAACAGCATCTTTTCACTGTGCCGAAAAAAATGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACCTGTCGATTCTGTCATGACAATGTCAGTGATCACTCAATGGACAGGGCTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGATTTGCAATTGTTGCCTTGGGATAAAGCTGGAGAGCCATAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCCAGTGCAACAGTCCGACCTCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCGTACACTTGCAGCCATTATACCTGCCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCCTTGTTGGCTGCTGAGGAGCTGCCAGAAGAGTACAGGGATCGTTGCCAGGACATATTGTGCAATGACTGTGAGCGGAAAGGGCCATCGCGGTTCCATTGGCTATATCATAAATGTGGGTTTTGTGGATCATACAACACTCGAGTAATCAAGAATGAAACCACATCTGCTGATTGCCCCTCTTCCAATCAGTGA 3633 42.64 MATPLTGLQHRDGGGGVAFLANSVNKMDSASSPSSPNDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNCNTQHDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCLIKVVPEEKLLQQVIFTWMEARSCDNASTSCFGDSLVIYHTDPSTDTSNHETGNVNCACELTSHGKRKYLESKSETLDYVATHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRCLIENIQSAGASSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSVKEDEARDILKNIQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTDIEEDIVQSSCSCAPALAAREGPKSDPETSANVKRPAIRNVPMPCKSCDGRIASETVNVQQQCCSDQSCHVPALGVNIKNLGLSSIFTSKSMRSLSPSSCAPSLNSSLFSWETDCSSSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVPLDESSSRSVVGSVNVVGKDCNRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTLMDTWKQATKNTMFNEWLNECWRGTASSTLNGETSEACIAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGEDVAGRTASFHCAEKNVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCERKGPSRFHWLYHKCGFCGSYNTRVIKNETTSADCPSSNQ 1210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23789810 23800065 + Lsi06G013200.1 Lsi06g01320 666050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01320 1210 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 31 1041 - -
Lsi06g01320 1210 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1040 1206 - -
Lsi06g01320 1210 CDD Hr-like 51 177 - -
Lsi06g01320 1210 Pfam Zinc-ribbon 1137 1194 IPR039512 -
Lsi06g01320 1210 Gene3D nmb1532 protein domain like 312 459 - -
Lsi06g01320 1210 Gene3D nmb1532 protein domain like 46 196 - -
Lsi06g01320 1210 CDD RING-H2_Pirh2 1089 1132 - -
Lsi06g01320 1210 SMART ring_2 1090 1131 IPR001841 -
Lsi06g01320 1210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1083 1134 IPR013083 -
Lsi06g01320 1210 SUPERFAMILY RING/U-box 1089 1135 - -
Lsi06g01320 1210 CDD Hr-like 662 822 - -
Lsi06g01320 1210 ProSiteProfiles Zinc finger CHY-type profile. 1000 1070 IPR008913 GO:0008270
Lsi06g01320 1210 ProSiteProfiles Zinc finger CTCHY-type profile. 1022 1089 IPR017921 -
Lsi06g01320 1210 SUPERFAMILY CHY zinc finger-like 1000 1071 IPR037274 GO:0008270
Lsi06g01320 1210 PANTHER CHY ZINC FINGER PROTEIN 1040 1206 - -
Lsi06g01320 1210 CDD Hr-like 313 441 - -
Lsi06g01320 1210 Gene3D nmb1532 protein domain like 655 878 - -
Lsi06g01320 1210 Gene3D - 1161 1205 - -
Lsi06g01320 1210 ProSiteProfiles Zinc finger RING-type profile. 1090 1132 IPR001841 -
Lsi06g01320 1210 Pfam Hemerythrin HHE cation binding domain 660 823 IPR012312 -
Lsi06g01320 1210 Pfam Hemerythrin HHE cation binding domain 309 443 IPR012312 -
Lsi06g01320 1210 Pfam Hemerythrin HHE cation binding domain 53 179 IPR012312 -
Lsi06g01320 1210 PANTHER CHY ZINC FINGER PROTEIN 31 1041 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01320 Lsi-Chr6:23789810 Lsi06g01496 Lsi-Chr6:25414014 2.84E-06 dispersed
Lsi04g00238 Lsi-Chr4:2412687 Lsi06g01320 Lsi-Chr6:23789810 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01320 K16276 - csv:101215023 2318.89