Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01321 ATGGCTATGCCGCCTGATAGATCAAACCCACTTCACAACTTCTCTTTGCCGTATCTCAAATGGGGTTCTCAGAGATTCCTCAAGTGTATGAGGGTTTCTTCTAACTCCAACCCTTCTACCCTTGATCATCCTACTATTCAAAGCCAATCGAAATCCTATCAATTCCGGGCGAGACCCATTAATTCTAAGCCCGTGAACTTCCCCAAGGTTTCTTCTCCGATGAACCCGAATCATTCCAAACAGAAACCAAGCAACGATCGAAGCAGTTCCATCGAAATCATACGAGAGAAGATCATGCTCGATATTAGGGAGGAATCGAAGAGACTCAAGTTTTCAATTACTGATGAAGGGGGTGAGGATGAATCCGCTGCGGCTCGTCCGTGGAATTTAAGGACTCGCAGAGCAGCATGTAAGGCTCCTCAAGACGAGAGGAATCCGGAATTGGGTTCATCTTCAACCAAGGCTGTAATGAAGAAGAAGGAGAAGAATCGGACTGCTTTATTTGTCTCGTTGTCGAAAGAGGAGCTTGAAGAGGACTTTGCGGTGCTGGTTGGTAGGCTACCGAGGAGGCCAAAGAAGAGGCCAAGAGCTGTACAAAAGCAAATGGATGCACTTTTTCCTGGACTGTTACTGACTGAAATTACTCTAGATTCATATAAAGTTGATGATGTTCCTGAAGCTTGA 684 45.47 MAMPPDRSNPLHNFSLPYLKWGSQRFLKCMRVSSNSNPSTLDHPTIQSQSKSYQFRARPINSKPVNFPKVSSPMNPNHSKQKPSNDRSSSIEIIREKIMLDIREESKRLKFSITDEGGEDESAAARPWNLRTRRAACKAPQDERNPELGSSSTKAVMKKKEKNRTALFVSLSKEELEEDFAVLVGRLPRRPKKRPRAVQKQMDALFPGLLLTEITLDSYKVDDVPEA 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23803475 23805195 + Lsi06G013210.1 Lsi06g01321 666051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01321 227 MobiDBLite consensus disorder prediction 62 91 - -
Lsi06g01321 227 MobiDBLite consensus disorder prediction 62 88 - -
Lsi06g01321 227 MobiDBLite consensus disorder prediction 136 157 - -
Lsi06g01321 227 Pfam Protein of unknown function (DUF1639) 171 219 IPR012438 -
Lsi06g01321 227 PANTHER PUTATIVE (DUF1639)-RELATED 2 223 - -
Lsi06g01321 227 PANTHER OS01G0688600 PROTEIN 2 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01321 - - - csv:101214785 388.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01321 Lsi-Chr6:23803475 Lsi08g00381 Lsi-Chr8:10509652 1.16E-31 dispersed
Lsi09g00447 Lsi-Chr9:4727440 Lsi06g01321 Lsi-Chr6:23803475 6.05E-25 transposed
Lsi04g00242 Lsi-Chr4:2467457 Lsi06g01321 Lsi-Chr6:23803475 3.43E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g300 . . . . . Bpe13g00357 . . . . Cma10g00304 Cma11g00283 Car10g00289 Car11g00257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00325 Cmo11g00286 . . . . . . . . . . . . . . . . . . . . Lsi06g01321 . . Cme02g01730
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011010 1 1 0 1 1 1 2 1 1 0 1 0 2 1 1 2 0 1 2 0 0 1 1 1 1 1 1 2 1 3 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01321 Lsi_Chr06 FPKM 0.567647 0.860961 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0