Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01323 ATGAAACCTAATTGGGAGCTTAAGCACTGCTGCAATCATGAGCAAGTTGTGTTTCTGATCACCGTTTCTGTTTGTACCGTTGTTATACTAGCGCTCTGGAGGACGATACTGCTGAAACCATTCAAACTTGTCACGGTGTTTCTTCACGAGGCAAGCCATGCCATTGTTTGCAAGCTTACCTGTGGTCATGTAGAAGGAATTCAGGTCCATGCAGATGAAGGTGGCGCTACACAAACACGTGGTGGCGTGTATTGGTTGATCTTGCCCGCCGGATATATTGGCTCTTCATTCTGGGGGATGCTCTTAATACTAGCGTCTACAAATCTTCTTACTTCCAGAATAGCTGCAGGGTGCTTTCTTGTTTCCCTTCTTGTTGTACTTTGTGTAGCTAAGAATGCAACACAACGCATGTCCCTTATGAAATATTCTCATCTTGTGCCATTAGGATTCATCGTTTTTCTTGGTGTCGTCTGGGTCCTGCAAGAAACAACGAAAGTGCGTGTTCTTCGTTATGTAATCCTCTTTATTGATATTTATGATGACCTAATATCCCGAAGAGTTCATTCAAGTGATGCTGAGAAATTTGCGGAAGTGTGTCCTTGCCCCTGTAACGGAGTTGGATGGGGTATTATTTGGGGTTTTATATCTTTCATCTTTCTTTGTGGAGCTATGTACCTTGGTCTTGTTATCTTGTCTTGA 699 43.06 MKPNWELKHCCNHEQVVFLITVSVCTVVILALWRTILLKPFKLVTVFLHEASHAIVCKLTCGHVEGIQVHADEGGATQTRGGVYWLILPAGYIGSSFWGMLLILASTNLLTSRIAAGCFLVSLLVVLCVAKNATQRMSLMKYSHLVPLGFIVFLGVVWVLQETTKVRVLRYVILFIDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGIIWGFISFIFLCGAMYLGLVILS 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23817301 23821022 + Lsi06G013230.1 Lsi06g01323 666053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01323 232 Pfam Peptidase M50B-like 24 222 - -
Lsi06g01323 232 PANTHER OS02G0221600 PROTEIN 1 232 - -
Lsi06g01323 232 PANTHER - 1 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01323 - - - csv:101214542 404.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00440 Lsi-Chr3:4943620 Lsi06g01323 Lsi-Chr6:23817301 2.81E-119 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g308 Blo04g00828 . . . . . . . Cmo13g01062 . Cma10g00303 . Car10g00288 . . . . . . . . . . . Cla06g01460 Cam06g1612 Cec06g1674 Cco06g1668 Clacu06g1576 Cmu06g1528 Cre06g2339 . Cone16ag0570 . . . . Chy12g01435 Cme12g01873 . . . . . . . . . Cmo10g00324 . Cma13g01021 . . . . . Bhi08g01237 . . . . . . Cla04g01089 . . . . . . Lsi06g01323 Csa01g00394 Chy02g02355 Cme02g01732
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001765 2 4 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 2 2 3 11 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01323 Lsi_Chr06 FPKM 1.417477 1.655202 2.871328 2.514471 1.990561 2.192485 1.907102 3.229057 3.326856 3.49655