Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01329 ATGGCTATTGCCGTGTGGGCGACTTTACAGTATGGGAGTTTTCAACGTCAACTACTAGTTGAGGAGCTAAACAAAAGATGGAGGCAAATTGTATTGGACACCTCGCCCAGTACACCACTGGAGCACTGCGAATGGTTGAATAAGCTGTTGACTGAGATTTGGCCTAACTACATCAACCCAAAACTTTCACTAAAGTTCTTTACTATTGTTGAGAAACGATTAAAACACCGGAGGCCGAAACTTATTGAGAGAATAGAACTATTGGAGTTCTCTCTAGGCTCATGTCCTCCTGGCTTGGGCCTTCGTGGGACTCAATGGTCAACATCTGGTAATCAGCGAATCATGCGCTTGGGTTTTGATTGGGACACAAATGAAATGAGTATTATGTTGCTTGCCAAGTTGGCCATGCCATTTACTGGAACTGCACGGATTGTTATCAACAGCATTCACATAAAGGAAGTGAGAATAGGAGTTGCTTTTGGAAGTGGTGGAAGCCAGTCATTACCTGCAACAGAGCTGCCAGGTGTTTCTTCTTGGCTGGTTAAACTTCTAACGGACATTATAGTAAGGACAATGGTTGAACCTCGACGCCGCTGTTTCTCATTGCCAGCAGTTGACCTGAGTAAAAAGGCTGTTAGTGGTACAATATATGTGACAGTCATCTCAGCCAGTAAGCTTTCCAGAAACAGCTTGAGAGGAAACTCTTCCAGGAAGCCACTGAGTACTTATATGAATAGTCCACCAGAAGAAAACTTAAGAGATAAGGATGATCTGCAGACATTTGTCGAGGTGGAACTTGATGAGCTAAGTAGGAGGACTACTGTAAGATTAGGCTCCAGCCCTGTATGGAATTCAACATTCAATATGATTCTACATGAAGATACAGGAACTCTTCGGTTCAATCTTTATGAGTCTAACCCAAGCAATGTGAAGTATGACTATCTAGCCAGTTGTGAAGTAAAGATGAAGTACGCTGCTGATGATTCCACAACATTTTGGGCAATAGGATCTGACTCTGAAGTAATAGCAAAGCACAGTGAGTTTTGTGGAAAAGAGGTTGAAATGGTTGTCCCATTTGAAGGCGTCGATTGTGGGGAGTTAACAGTGAAGCTTATTGTTAAAGAATGGCAATTTTCTGATGGTTCACATAGCTCGCATAATTTTCATGTTAGACCTCAACAATCAGTTAATGGATCCTCAAACTTTCCTTCAAGAACTGGAAGGAAGATCGCCATTACCATTGTAGAAGGAAAAGATCTCAGTTTGAAGGATAAATCTGGGAAGTGCGAGTCATATGTAAAATTGGAATATGGGAAGACTTCCTTTCAGGCTCTCCAGAAAACAAAAACTGCTATTTCCGTAAATCCTAATTGGAATCAGAAGTTCGAGTTTGATGAGATTGGAGGTGGTGAATACCTCAAGATAAAATGCTTTGGTGTAGATATATTCGGTGATGAAAACATCGGTACTGCCCGAGTAAATTTGGAAGGACTTATTGAAGGAACCGTCAGGGATGTATGGGTCCCTCTTGAAAAAGTAAATTCTGGAGAACTAAGGCTTATGATAGAGGCAGTCAAGGCAGATGACTATGAAGGATCAAGGGGTTCAAACGGCTCAAATAATGGTTGGATAGAACTTGTTATCATAGAAGCTAAAGATTTGGTTGCTGCTGATATTGGAGGGACAAGCGACCCTTATGTGAGAGTACAATACGGAAACTTGAAGAAAAGAACAAAGGTTATGTTCAAAACTTTAAATCCTCATTGGAATCAGACCTTAGAGTTCCCTGATGATGGCAGCCCTTTACTGTTGCATGTGAAAGACCACAATGCTTTACTACCCACATCGAGCATAGGCGACTGTGTTGTCGAGTATCAAAGATTGCCTCCAAACCAAATGGCTGACAAATGGATACCTCTTCAAGGGGTGAAAAGAGGAGAGATCCACATCCAAATCACAAGAAAAGTTCCAGATCTAGAGAAAGAAAAAAGACATAGTTTAGATTCAAGACCCACCTCGGATTCTGAATCATCTGTTACCAAGGCACATCAAGTTTCAAGTCAGATTAAGGAAACAATCGGCAAGTTTCACACTTTAATCGAGGAGGCTAATCTCGACGGTCTTTCGGCGACGTTGAGTGAACTAGAAAGCCTGGAGGAACTGCAAGAGGAATATATACTAAAGCTTGAAACTGAACAAATGCTTCTTATAAATAAGAGACCACTTCAGATAGATATGGCCTTCGCAACTGCCAAACTATCGGAACTTCCATTGAAGAGCTCACTTCCACTCTCCTCTCACTCCCGTACTCTTCTCTCAAACCCCAACTTCTCTTTGCAGATTCTAAACACATTCTCTTCTCTCAGAACCCCTACTGAGCATAGCGGCAAAAGAACCCCTAAAACCTCCCACAATTCTGGACCCCCATCTTCTTCTTCTTCTTCTTGGATCTCCAAATGGCCTCCTGGGAGCTCTCGGTATGATCGTAAAGTCGAGAAAAAGGTGGTCCAACCGACCCGAGATGATCGGACCGATCGAGCTGAGAATCAGACGCAGTACTTCGATAAGGACAAAGGGCAGACTGCAATTGAGCGAATTGTGCTTCGCTTACGGAATTTAGGGATAGGTTCAGATGATGAGGATGAGGATGAAGAGGGTAACGAATTGGATTCTCTCGACGCAATGCCGGTGACTGGAGAGGAAAGACTTGGGGATTTACTTCAACGTGAATGGATTCGACCGGATGGCGCATTGGACTCGAATGAGGACGGGGAGGATGAAATGGTTCTACCATGGGAGAGAGAGGAGGAAAGGGCTGAAGAGGAGGAGGGTGGAAGAGGGTTGAAGAGGAGAAAGATGAAAGCTCCTACATTAGCTGAATTGACTATTGAAGATGAGGAGCTGAGGCGATTGAGGAGAATGGGGATGTTTCTTAGAGAGCGGATTAATGTACCGAAAGCTGGGATTACACAGGCAGTGCTAGAGAAGATTCATGGGAAATGGAGGAAGGAGGAACTGGTAAGGCTTAAGTTTCATGAGGAGCTTGCGCATGATATGAAGACAGCACATGAGATTGTAGAGCGACGAACCGGGGGATTGATTCTATGGAGGTCTGGAAGTGTTATGGTAGTTTACCGCGGTAGTAACTATGAAGGACCTTCTAAAACTAAACCCCTTACAAGGGAGCGGGATGGGGTATTCATCCCAGATGTTTCTTCTGCTGCCACTTCGACAATGAGTGACAATGTGGCAGCTTCAGCTCCAGAGAAGACCAAGATGCCTATTGGGCCTCCAAAGTCTAATGAGGGCTTGTCAGAGGAAGAGGCTGAATACAATCAATTACTAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACAGGAGTGCTTCCTATTGATGCCGATCAGCTTCCTCCAAGTATTCCCGGTTACAAAACTCCTTTCAGGCTTCTTCCAACTGGAATGCGGTCTCGACTTACCAATGCAGAGATGACTCAGATGAGGAAACTTGCAAAATCCTTACCTTGTCATTTTGCCCTTGGGAGAAACAGGAACCATCAGGGTTTGGCTGTTGCTATACTTAAACTTTGGGAAAAAAGCCTAGTGGTTAAAATTGCTGTTAAAAGAGGCATACAGAATACCAATAATAAACTCATGGCTGAGGAGATAAGGTTACTCACATTACATTTTTCAAATCTAGACGAAAACTTAACAGGAGGTGTGTTACTATTGAGAAATAAATATTTCATCGTCATATACCGCGGGAAGGATTTTCTCCCACCAAGTGTAGCTGTAGCTTTGGCAGAAAGGCAGGAATTAACAAAACAGATTCAAGATGTGGAAGAGAAAGCTCGAAGTAAAGTGGTCGAGGCAAGTTCATCAAGCATCGATGGACAGGCACCTGCAGGTACCTTGGCTGAATTCTATGAGGCTCAGTCCAGGTGGGGAAGGGAAATAACTGCTGAGGAGCGTGAAAAAATGGTCGAAGAAAGCTCCAGAGCAAAAACTGCAAGACTTGTCAGACGAATTGAACATAAGCTGGGTGTTGCCCAAGCGAAGAAACTTAGAGCAGAAAGATTGCTATCTAAAATTGAAGCATCCATGGTTCTATCTGGCCCTGATGATGACCAGGAAACAATAACAGATGAGGAACGGCATAGAGAGCTCGTGAAGTTAATTAGCAAGCAAACAACACTTGCTTTTGTGGAAGAAACTGCAAGACTGTTAGAGTATGAGAGTGGTGGAATACTAGTTTCAATAGATAGAGTTCCAAAAGGATATGCCCTTATTTACTATCGAGGAAAGAATTATCGTCGACCCATTGCTTTGAGACCAAGAAACTTACTTACAAAGGCAAAAGCATTAAAGCGTTCAGTTGCCATGCAGCGTCATGAGGCTCTCAGTCAGCATATATCTGAACTCGAGAAAAACATAGAGCAAATGAAGAAAGAAATTGGTGTCACTGAAGGTTCAGATGATGAGAATAAAATGTCGTCTCAGGATGGACCTGTCTCAGAATCTTTCCAAGACGAGGAAGCATCTTTGTCTGCGTTTTCAGATGATGATAATGATGAAGATAGCATTGATGAAGACAGTGAGTACGAAGAGGATGAAGATTTTGATTTTTCCGACTCAGAAAGCACTGATGATCTACTGAACTAG 4665 43.11 MAIAVWATLQYGSFQRQLLVEELNKRWRQIVLDTSPSTPLEHCEWLNKLLTEIWPNYINPKLSLKFFTIVEKRLKHRRPKLIERIELLEFSLGSCPPGLGLRGTQWSTSGNQRIMRLGFDWDTNEMSIMLLAKLAMPFTGTARIVINSIHIKEVRIGVAFGSGGSQSLPATELPGVSSWLVKLLTDIIVRTMVEPRRRCFSLPAVDLSKKAVSGTIYVTVISASKLSRNSLRGNSSRKPLSTYMNSPPEENLRDKDDLQTFVEVELDELSRRTTVRLGSSPVWNSTFNMILHEDTGTLRFNLYESNPSNVKYDYLASCEVKMKYAADDSTTFWAIGSDSEVIAKHSEFCGKEVEMVVPFEGVDCGELTVKLIVKEWQFSDGSHSSHNFHVRPQQSVNGSSNFPSRTGRKIAITIVEGKDLSLKDKSGKCESYVKLEYGKTSFQALQKTKTAISVNPNWNQKFEFDEIGGGEYLKIKCFGVDIFGDENIGTARVNLEGLIEGTVRDVWVPLEKVNSGELRLMIEAVKADDYEGSRGSNGSNNGWIELVIIEAKDLVAADIGGTSDPYVRVQYGNLKKRTKVMFKTLNPHWNQTLEFPDDGSPLLLHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIHIQITRKVPDLEKEKRHSLDSRPTSDSESSVTKAHQVSSQIKETIGKFHTLIEEANLDGLSATLSELESLEELQEEYILKLETEQMLLINKRPLQIDMAFATAKLSELPLKSSLPLSSHSRTLLSNPNFSLQILNTFSSLRTPTEHSGKRTPKTSHNSGPPSSSSSSWISKWPPGSSRYDRKVEKKVVQPTRDDRTDRAENQTQYFDKDKGQTAIERIVLRLRNLGIGSDDEDEDEEGNELDSLDAMPVTGEERLGDLLQREWIRPDGALDSNEDGEDEMVLPWEREEERAEEEEGGRGLKRRKMKAPTLAELTIEDEELRRLRRMGMFLRERINVPKAGITQAVLEKIHGKWRKEELVRLKFHEELAHDMKTAHEIVERRTGGLILWRSGSVMVVYRGSNYEGPSKTKPLTRERDGVFIPDVSSAATSTMSDNVAASAPEKTKMPIGPPKSNEGLSEEEAEYNQLLDGLGPRFVEWWGTGVLPIDADQLPPSIPGYKTPFRLLPTGMRSRLTNAEMTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVVKIAVKRGIQNTNNKLMAEEIRLLTLHFSNLDENLTGGVLLLRNKYFIVIYRGKDFLPPSVAVALAERQELTKQIQDVEEKARSKVVEASSSSIDGQAPAGTLAEFYEAQSRWGREITAEEREKMVEESSRAKTARLVRRIEHKLGVAQAKKLRAERLLSKIEASMVLSGPDDDQETITDEERHRELVKLISKQTTLAFVEETARLLEYESGGILVSIDRVPKGYALIYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEQMKKEIGVTEGSDDENKMSSQDGPVSESFQDEEASLSAFSDDDNDEDSIDEDSEYEEDEDFDFSDSESTDDLLN 1554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23873869 23887579 + Lsi06G013290.1 Lsi06g01329 666059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01329 1554 ProSiteProfiles CRM domain profile. 1346 1445 IPR001890 GO:0003723
Lsi06g01329 1554 SMART CRS1_YhbY_2 963 1046 IPR001890 GO:0003723
Lsi06g01329 1554 SMART CRS1_YhbY_2 1160 1255 IPR001890 GO:0003723
Lsi06g01329 1554 Pfam CRS1 / YhbY (CRM) domain 964 1046 IPR001890 GO:0003723
Lsi06g01329 1554 Pfam CRS1 / YhbY (CRM) domain 1160 1255 IPR001890 GO:0003723
Lsi06g01329 1554 ProSiteProfiles C2 domain profile. 391 508 IPR000008 -
Lsi06g01329 1554 MobiDBLite consensus disorder prediction 916 953 - -
Lsi06g01329 1554 MobiDBLite consensus disorder prediction 788 856 - -
Lsi06g01329 1554 Gene3D C2 domain 213 355 IPR035892 -
Lsi06g01329 1554 Pfam C2 domain 214 323 IPR000008 -
Lsi06g01329 1554 Pfam C2 domain 544 640 IPR000008 -
Lsi06g01329 1554 Pfam C2 domain 409 510 IPR000008 -
Lsi06g01329 1554 SUPERFAMILY YhbY-like 962 1055 IPR035920 -
Lsi06g01329 1554 MobiDBLite consensus disorder prediction 1078 1103 - -
Lsi06g01329 1554 CDD C2 544 640 - -
Lsi06g01329 1554 ProSiteProfiles C2 domain profile. 514 638 IPR000008 -
Lsi06g01329 1554 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 1386 1548 - -
Lsi06g01329 1554 Gene3D C2 domain 527 655 IPR035892 -
Lsi06g01329 1554 Gene3D C2 domain 392 526 IPR035892 -
Lsi06g01329 1554 SUPERFAMILY YhbY-like 1160 1263 IPR035920 -
Lsi06g01329 1554 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 748 1386 - -
Lsi06g01329 1554 SUPERFAMILY YhbY-like 1382 1444 IPR035920 -
Lsi06g01329 1554 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 540 653 IPR035892 -
Lsi06g01329 1554 CDD C2 412 510 - -
Lsi06g01329 1554 MobiDBLite consensus disorder prediction 672 686 - -
Lsi06g01329 1554 Gene3D - 1378 1449 IPR035920 -
Lsi06g01329 1554 Gene3D - 1159 1263 IPR035920 -
Lsi06g01329 1554 ProSiteProfiles CRM domain profile. 961 1057 IPR001890 GO:0003723
Lsi06g01329 1554 ProSiteProfiles CRM domain profile. 1158 1266 IPR001890 GO:0003723
Lsi06g01329 1554 MobiDBLite consensus disorder prediction 931 953 - -
Lsi06g01329 1554 ProSiteProfiles C2 domain profile. 197 334 IPR000008 -
Lsi06g01329 1554 MobiDBLite consensus disorder prediction 1498 1515 - -
Lsi06g01329 1554 MobiDBLite consensus disorder prediction 1516 1554 - -
Lsi06g01329 1554 Gene3D - 961 1059 IPR035920 -
Lsi06g01329 1554 MobiDBLite consensus disorder prediction 1488 1554 - -
Lsi06g01329 1554 Coils Coil 1264 1291 - -
Lsi06g01329 1554 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 408 524 IPR035892 -
Lsi06g01329 1554 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 207 326 IPR035892 -
Lsi06g01329 1554 MobiDBLite consensus disorder prediction 659 686 - -
Lsi06g01329 1554 MobiDBLite consensus disorder prediction 801 821 - -
Lsi06g01329 1554 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 748 1386 IPR045278 GO:0000375|GO:0003729
Lsi06g01329 1554 Coils Coil 1465 1492 - -
Lsi06g01329 1554 SMART C2_3c 409 507 IPR000008 -
Lsi06g01329 1554 SMART C2_3c 543 637 IPR000008 -
Lsi06g01329 1554 SMART C2_3c 215 334 IPR000008 -
Lsi06g01329 1554 MobiDBLite consensus disorder prediction 825 856 - -
Lsi06g01329 1554 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 1386 1548 IPR045278 GO:0000375|GO:0003729
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01329 - - - csv:101204113 1338.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01952 Lsi-Chr4:26628252 Lsi06g01329 Lsi-Chr6:23873869 3.67E-09 dispersed
Lsi06g01329 Lsi-Chr6:23873869 Lsi11g00349 Lsi-Chr11:3675537 1.70E-07 dispersed
Lsi02g00412 Lsi-Chr2:3446359 Lsi06g01329 Lsi-Chr6:23873869 1.91E-09 transposed
Lsi03g00434 Lsi-Chr3:4916008 Lsi06g01329 Lsi-Chr6:23873869 2.29E-43 transposed
Lsi03g00435 Lsi-Chr3:4918667 Lsi06g01329 Lsi-Chr6:23873869 3.05E-44 transposed
Lsi03g00436 Lsi-Chr3:4920202 Lsi06g01329 Lsi-Chr6:23873869 6.02E-09 transposed
Lsi03g00772 Lsi-Chr3:10948499 Lsi06g01329 Lsi-Chr6:23873869 6.63E-09 transposed
Lsi03g01429 Lsi-Chr3:25248031 Lsi06g01329 Lsi-Chr6:23873869 2.80E-122 transposed
Lsi03g01533 Lsi-Chr3:26330386 Lsi06g01329 Lsi-Chr6:23873869 5.37E-07 transposed
Lsi04g01206 Lsi-Chr4:18610628 Lsi06g01329 Lsi-Chr6:23873869 1.39E-07 transposed
Lsi05g01670 Lsi-Chr5:24320545 Lsi06g01329 Lsi-Chr6:23873869 1.43E-132 transposed
Lsi05g01993 Lsi-Chr5:27012460 Lsi06g01329 Lsi-Chr6:23873869 1.32E-07 transposed
Lsi06g00286 Lsi-Chr6:3305872 Lsi06g01329 Lsi-Chr6:23873869 4.25E-115 transposed
Lsi11g00242 Lsi-Chr11:2459861 Lsi06g01329 Lsi-Chr6:23873869 1.68E-09 transposed
Lsi02g00181 Lsi-Chr2:1537898 Lsi06g01329 Lsi-Chr6:23873869 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016343 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01329 Lsi_Chr06 FPKM 6.498205 7.636488 19.758093 18.419432 6.865015 6.127648 7.932726 17.167765 15.657003 20.108889
Lsi06g01329 Lsi_Chr00 FPKM 7.935729 8.470756 5.640257 5.069027 2.31312 2.158208 2.511917 5.069372 5.484501 6.128793