Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01333 ATGCGTATGAGCTGTAATGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCAATCCGACCCTGTCTTCAATGGATCAAATCCCCCCAATCCCAAGCCAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTTGTTAACCTCATCAATGCCGGCCCCGACCATCTCCGCCCAGCTATTTTTAAATCTTTGCTTTTCGAGGCGTGTGGCCGGATTGTGAATCCCATTTTTGGGTCCGCTGGATTGTTGTGGTCTGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCTGTTCTGAAAGGCGCGCCGATTCTGCCGGTTTCTTCCGAGACGGCGGCGTCGCACATGGGTCCACCCTTGAAAGGCTGTGACATCCGTCACGTCTCCAAACAACAAGGCTCCGTCTCCGATTCCGCACTTAGAAAGATCAAGACGCGGCGGCGGTTCAAACGCTCGGCGATGGCGGCCACCAAGCCGAAGCCGAAGGAGGAGGAGGCAGCGGTGGTGCCCGGGTTTAAATTCGAGGACCCGACCCGGATGGTATCGGAGCCCCAGTGTTTGAAGTTTGAGTTGGATAATTGGGAGGGTCGTGAGTCGCCGGAAAAGGACTGCGGCAGCGACGACACCGAGTGCTTGTCGGTGGAGACTGTGGAGGCTTCTTCGGTGGGCCAGGGTGGTGACGTGGAATTGGAACTTACCTTGGGGTTTGGGTACAGTTGGATGCTGACGTGA 747 57.03 MRMSCNGCRVLRKGCSESCSIRPCLQWIKSPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGPPLKGCDIRHVSKQQGSVSDSALRKIKTRRRFKRSAMAATKPKPKEEEAAVVPGFKFEDPTRMVSEPQCLKFELDNWEGRESPEKDCGSDDTECLSVETVEASSVGQGGDVELELTLGFGYSWMLT 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23917405 23918670 + Lsi06G013330.1 Lsi06g01333 666063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01333 248 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 241 - -
Lsi06g01333 248 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 241 - -
Lsi06g01333 248 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Lsi06g01333 248 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01333 Lsi-Chr6:23917405 Lsi02g01015 Lsi-Chr2:10457656 8.64E-08 dispersed
Lsi05g00382 Lsi-Chr5:4824488 Lsi06g01333 Lsi-Chr6:23917405 1.51E-92 transposed
Lsi04g00252 Lsi-Chr4:2584790 Lsi06g01333 Lsi-Chr6:23917405 7.48E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25525 PF03195 LOB 6.40E-22 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01333 - - csv:101219232 449.129