Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01338 ATGGCTCTGACCATAACCAACGGCGGTGCCACCGGCGGCACCGGCGGGGGAATTCTCTACAGAACCTCCACTAGAACTCCTTCTAACCAATTCCTATTCCGCCGCAACGCGCTCTTTCCGCCGTCCAAAGAAGCCCGCACCCTCCATGTCGCTCAAGCCAAGAAATCCTCCTTCCGAACCGGCCGATTCGACAGTAAGAATCGGAGGAGCTCGACGACAACCAAGGAACAGGAAGAAGAAGACGAACGAAATCGGACGGCCGAGATTTTAAGCGACAGCCCCAACGTTGAAAATGCTGGCGTAGCGTTTGATGTGGATGAGAATCTGCCGGAATTGCCCGGGCTTCAGCCTGATTTCTGGGAGGGTCCGCAGTGGGATGCCCTAGGCTTCTTCCTGGAGTATTTGTGGGCTTTTGGCATCGTTTTCGCACTTATTGCATGTGGGATTGCTGTCACTACATATAACGAAGGAGCAACTGATTTCAAGGACACACCTGCATATAAAGAATCAGTTCAAACTCGAGAGATATTAGAAGAACCCGAGGCATCAAACCCAGATGTGTTTGAATCTAATCCAACTGAGGTGGCTCCAAGTTTGGAATGA 603 51.41 MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAGVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSLE 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23967351 23968910 + Lsi06G013380.1 Lsi06g01338 666068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01338 200 MobiDBLite consensus disorder prediction 59 88 - -
Lsi06g01338 200 MobiDBLite consensus disorder prediction 170 200 - -
Lsi06g01338 200 MobiDBLite consensus disorder prediction 1 22 - -
Lsi06g01338 200 PANTHER AT-RICH INTERACTIVE DOMAIN PROTEIN 1 200 - -
Lsi06g01338 200 MobiDBLite consensus disorder prediction 50 92 - -
Lsi06g01338 200 MobiDBLite consensus disorder prediction 186 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01338 - - - csv:101218989 340.117
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g333 . . Bda06g00801 . . . . Bma12g01227 . . Cma10g00240 . Car10g00226 . . . . . . . . . . . Cla06g01475 Cam06g1629 Cec06g1691 Cco06g1685 Clacu06g1594 Cmu06g1544 Cre06g2356 . . Cone13ag0289 Cone19ag0274 . . . . . Blo15g00075 . . Bpe07g01031 . . . . Cmo10g00254 . . . . . . Cpe18g00753 . . . . . . . . . . . . . . Lsi06g01338 Csa01g00375 Chy02g02369 Cme02g01753
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011206 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01338 Lsi_Chr06 FPKM 3.187845 2.579927 0.967224 0.427626 0.0 0.062501 0.0 1.05649 0.936944 0.594745
Lsi06g01338 Lsi_Chr00 FPKM 3.055145 2.354556 0.879041 0.549546 0.0 0.079386 0.0 0.961238 1.02588 0.628494