Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01340 TTTGCCGAAAAGAGGGAGAGGCTTCTTTCGGCTAAGGAATTTCCAGACCTAGGTTTCAGCACCATTGAAACCATTCATGAGAATCCTTCCTGTTGTTCCTCTGTTCCTCATAGAATCTCTAATCTATGGAACTCCGTTCGGGATGTTCTTTACAAGGCTTGGCAGATGGGTGTTTCCGACCCTAGAAAGATCGTTTTCTCTGCTAAGATGGGTCTCGCTCTCACGCTTATTTCTTTGTTGATTTTCTTCAAACAGCCCGTTGAAGAGCTCAGCCGCTACTCAGTTTGGGCCATTCTCACTGTCGTCGTTGTCTTTGAATTTAGCATTGGTAATCTTGAATTTCCATCTCTTTCCTATTTCTTTTTTGATTCTGCTTCATTGCTTCTGGGTTGGCCTTGGATGATGTTTTGCACTAGACTTTCATTATACTCCATAATGATTAATGTAGTACATGATACCCTGAAACCAAGAAACTTGAGCTTACTGATGATTGTTTATCTAAACTGCTCCTCAGACCTTATGTTGATTGCCCTTTTGGTAAAGTGGGATTACTTGAAATCTTTAGTTTTTGTTGTAATTAGTGTTGTGGATGTTAAACTTATGGGCCCATCTTTGTTGACTTCTTGTTTTATGCTCCTTCTGCTCTGTTTTCCGATGTTGTTTTGCCTTTTGAGTACTCTAAATGTAGAACTCTTGTGCTATTCCACCATGATCTGTTTGCTTATTGGAACCAAAATGATGATTCTACGTGCAGGAGCAACTCTGAGCAAAGGATTGAACCGTGGAATTGGCACACTTTCAGCTGGAGGTCTTGCATTGGGAATGGCAGAATTATCAGTTCTTGCAGGAGAGTGGGAAGAGGTTGTGGTTGTTATCAGTATCTTTATAATAGGATTCTTTGCTACTTATGCTAAGCTGTATCCCACAATGAAGCCTTATGAATATGGATTTCGAGTCTTCTTGTTGACGTATTGTTTTATAATGGTGTCGGGATATAGGACTAGAGAATTTATCCATACAGCCGTGACGCGATTCTTGCTCATTGCGCTTGGTGCTGCAGTGTGTTTGGTTGTAAACATATGCATTTACCCCATTTGGGCTGGTGAGGATCTACACAATCTAGTAGTTAAAAACTTTGCAGGCGTGGCAGCATCCTTAGAAGGTTGGTTAGCTTCTCTTGAGATCGTTTCTGTTCAACCACTTTCCCTTCATTTAGGATGTGTTGATAGCTACCTTAATTGTGTCGAGTACGAGAGAATACCTTCGAAAATCCTTACCTACCAAGCATCTGATGATCCATTATACAAAGGCTACAGATCAGCTGTGGAATCTATGAGTCAAGAGGAATCTCTGGTGAGTTTTAGGGACATTATGCTGATGGGATTCGCCATCTGGGAACCGCCACACGGTCGTTACAAGATGCTTAAATATCCATGGAAAAATTATGTTGAAGTAGCTGGTGCACTGAGGCATTGTGCCTTTGCTATCATGGCATTACATGGATGTATACTATCAGAAATACAGGCCTCAGCCGAAAGGCGACAGGTATTTCGCAATGAGCTTCGGAGGGTAGGTAATGAAGGTGCTAAAGTTTTGCGCGAGCTTGGAAACAAGTTAAAGAAAATGGAGAAATTAGATTCAGCAGCCATACTCTCTGAGGTACATGATGCTGCAGAAGAACTGCAAAAGAAGATCGACGCAAAATCCTACCTTCTAGTCAATTCAGAGAGCTGGGAAATTGGAAATCGTCCCGACGACGTAGGGCAACCCCAAGAACTACTCAACTTGGATGATGAAGAAACAAGGTATCGCGAATACAGGTCCCTCAGTGAAGCTGTGCTTGATCTTAGGGCCTTCCCAATCCCAAAAAGCTGGGAGGACACTGTACCATCAGACATGAACTCTGTAAAGTCTGCTACATTACCCCCTTCAAAAATGTTCAAGAAACTGGGATCATGGCCTGCACAGGTAACAATCAAACCGAACGGAGTGATCCGAGAAGAAGAATCGAAAACATACGAAAATGCAAGCGCATTATCGTTAGCTACGTTTACTTCTCTCTTGATTGAATTTGTAGCAAGGCTGCAAAACCTTGTCGACTCGTTCGAAGAGTTGAGTGAGAAAGCAAAGTTTACTAACCCTATGGAGTGGGAAACATTGCAAGCTCCTGGGTTTTGGAGAAGATTTTGCAACTGCTTTAAGGTATAG 2208 42.21 FAEKRERLLSAKEFPDLGFSTIETIHENPSCCSSVPHRISNLWNSVRDVLYKAWQMGVSDPRKIVFSAKMGLALTLISLLIFFKQPVEELSRYSVWAILTVVVVFEFSIGNLEFPSLSYFFFDSASLLLGWPWMMFCTRLSLYSIMINVVHDTLKPRNLSLLMIVYLNCSSDLMLIALLVKWDYLKSLVFVVISVVDVKLMGPSLLTSCFMLLLLCFPMLFCLLSTLNVELLCYSTMICLLIGTKMMILRAGATLSKGLNRGIGTLSAGGLALGMAELSVLAGEWEEVVVVISIFIIGFFATYAKLYPTMKPYEYGFRVFLLTYCFIMVSGYRTREFIHTAVTRFLLIALGAAVCLVVNICIYPIWAGEDLHNLVVKNFAGVAASLEGWLASLEIVSVQPLSLHLGCVDSYLNCVEYERIPSKILTYQASDDPLYKGYRSAVESMSQEESLVSFRDIMLMGFAIWEPPHGRYKMLKYPWKNYVEVAGALRHCAFAIMALHGCILSEIQASAERRQVFRNELRRVGNEGAKVLRELGNKLKKMEKLDSAAILSEVHDAAEELQKKIDAKSYLLVNSESWEIGNRPDDVGQPQELLNLDDEETRYREYRSLSEAVLDLRAFPIPKSWEDTVPSDMNSVKSATLPPSKMFKKLGSWPAQVTIKPNGVIREEESKTYENASALSLATFTSLLIEFVARLQNLVDSFEELSEKAKFTNPMEWETLQAPGFWRRFCNCFKV 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23980808 23983861 + Lsi06G013400.1 Lsi06g01340 666070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01340 735 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 246 735 - -
Lsi06g01340 735 Pfam Aluminium activated malate transporter 54 110 IPR020966 GO:0015743
Lsi06g01340 735 Pfam Aluminium activated malate transporter 247 706 IPR020966 GO:0015743
Lsi06g01340 735 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 9 2 111 - -
Lsi06g01340 735 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 9 246 735 - -
Lsi06g01340 735 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 2 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01340 K25841 ALMT; aluminum-activated malate transporter family protein - csv:101218761 805.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00272 Lsi-Chr4:2774580 Lsi06g01340 Lsi-Chr6:23980808 3.03E-27 dispersed
Lsi06g01340 Lsi-Chr6:23980808 Lsi09g01669 Lsi-Chr9:25104405 5.74E-08 dispersed
Lsi05g01161 Lsi-Chr5:19508862 Lsi06g01340 Lsi-Chr6:23980808 1.39E-08 transposed
Lsi09g00199 Lsi-Chr9:2099048 Lsi06g01340 Lsi-Chr6:23980808 1.51E-41 transposed
Lsi04g00271 Lsi-Chr4:2769532 Lsi06g01340 Lsi-Chr6:23980808 9.38E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g336 . . . Bda15g00520 Bpe12g00688 . . . . . Cma10g00242 Cma11g00266 Car10g00228 Car11g00242 . . Cpe04g01409 . . . . . . . Cla06g01477 Cam06g1631 Cec06g1694 Cco06g1688 Clacu06g1597 Cmu06g1546 Cre06g2358 . . . . . . . . Blo13g00163 . . . . . . Bma08g00067 . Cmo10g00260 Cmo11g00271 . . . . . Cpe18g00751 . . . . . . . . . . . . . . Lsi06g01340 Csa01g00374 Chy02g02371 Cme02g01754
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006243 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 4 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01340 Lsi_Chr06 FPKM 49.263988 53.96035 50.510445 50.01918 64.56179 80.373161 70.796951 50.316673 47.596199 44.505089