Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01342 ATGTATGGTGGTGATGAGGTATCCGCTATAGTTATTGATCTGGGTTCTCACACTTGCAAGGCTGGTTATGCCGGAGAAGATGCTCCCAAGGCTGTTTTTCCCTCTGACGTTCAGGTTTTTGAGCTTTTGGATGTTCTTTTAGGAATTGCTAGCTGCATTGATTCGCTGCGCCCAGTTGTTGGATGCACTGATGAAATGGATGTTGATGACACTACAAGTACTGAAAAGAACTCTGGATCTGCTGGAGAATCTAAAAGTAATGCTAAAACTCTTGATTCTGATAAAGGCAAGGGAAAACGCAAACTATACGTTGGTTCTCAAGCTTTAGGGTTTCGCCGTGATAATATGGAAGTACTCTCACCTATAAAGGATGGAGTTGTTGTTGACTGGGATATGGTTGATAGCATATGGGATCACGCTTTTAGAGAATGTCTACTTATTGATCCGCAAGAACATCCGATGCTACTTGCGGAACCATCTTCTAATTCACAACAACAGAGAGAAAGGACGGCTGAGATTATGTTCGAGAAGTACAAAGTTCCTGCATTATTTTTGGCAAAAAATGCTGTTCTCACTTCATTTGCATCAGGTCGTGCTACATCACTTGTTGTTGACAGTGGTGGTGGATCAACAACTGTTGCCCCGGTACATGATGGCTATGTTCTACAAAAGGCTGTTGTATCTTCCCCTGTTGGTGGAGAATTTCTTACTGATTGTTTGTTAAAAAGTTTGGAGAGCAAAGATAATGCCAAGATACTCCTTCAAGAGAAAGGAAATACGACCAGGAGAATTTCAGTGGAACTTGATTTCCCAAATACGACTGAAAGTTACAAACTGTACTCACAGAGGGTAATTGCTAGTGATATTAAAGAATGCGTATGCCGAGCACCAGATACTCCTTATGATGAAAGTGCGTATTCAAATATCCCAATGACTCCTTACGAACTTCCTGATGGCCAAGAACTGTTTAGCAGTATACTGCTTGCTGGTGGAACAGCATCAATGCAACAGCTCAAAGAACGTCTCGAGAAAGATTTGTTAGAGGAGTCTCCTCAAGCTGCTAGGGTTAAAGTATTGGCGAGTGGAAATGCAACTGAAAGAAGATTCAGGTATGATCATTCCCCTCTCATTTCTTATGTTTATCGGAACAGTAGTCAACCTTTTGTGTATGCTGCGTCTTTGATTCTGTGTGCCATACCTATGATGATTAAACATAATAGTTGTACCGATAACTCTACAAGGAAAACTTCTGCAAAATATGAGAATAACAATTGGAGTCTTCCAGTTTTTACAATCGGTATGCCGCGGGTGAAGGCTAGTTATGGATTTCTTGTGAATGTCTGGATAGGAGGGAGTATATTGGCCTCTCTTGGTTCATTTCAGCAGATGTGGTTCTCCAAATCCGAGTTATTGGACGCTCGATCTGGATGTAAGCTTCGTCCCCAGGACAACAGGTTGTTAAATTTTAGTTTCCGTAGGCAACTCTTGAAATTATTGTGTAACCCCAGTCACATGTGTTCTGTTTAG 1527 41.45 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSDVQVFELLDVLLGIASCIDSLRPVVGCTDEMDVDDTTSTEKNSGSAGESKSNAKTLDSDKGKGKRKLYVGSQALGFRRDNMEVLSPIKDGVVVDWDMVDSIWDHAFRECLLIDPQEHPMLLAEPSSNSQQQRERTAEIMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKAVVSSPVGGEFLTDCLLKSLESKDNAKILLQEKGNTTRRISVELDFPNTTESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFRYDHSPLISYVYRNSSQPFVYAASLILCAIPMMIKHNSCTDNSTRKTSAKYENNNWSLPVFTIGMPRVKASYGFLVNVWIGGSILASLGSFQQMWFSKSELLDARSGCKLRPQDNRLLNFSFRRQLLKLLCNPSHMCSV 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24001247 24012779 + Lsi06G013420.1 Lsi06g01342 666072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01342 508 SUPERFAMILY Actin-like ATPase domain 197 469 IPR043129 -
Lsi06g01342 508 PANTHER - 2 322 - -
Lsi06g01342 508 PANTHER - 321 469 - -
Lsi06g01342 508 MobiDBLite consensus disorder prediction 73 87 - -
Lsi06g01342 508 SMART actin_3 7 491 IPR004000 -
Lsi06g01342 508 Pfam Actin 446 469 IPR004000 -
Lsi06g01342 508 Pfam Actin 4 321 IPR004000 -
Lsi06g01342 508 Gene3D - 321 362 - -
Lsi06g01342 508 CDD NBD_sugar-kinase_HSP70_actin 120 227 - -
Lsi06g01342 508 Gene3D - 3 202 - -
Lsi06g01342 508 PANTHER ACTIN 2 322 IPR004000 -
Lsi06g01342 508 PANTHER ACTIN 321 469 IPR004000 -
Lsi06g01342 508 SUPERFAMILY Actin-like ATPase domain 5 204 IPR043129 -
Lsi06g01342 508 Gene3D - 398 478 - -
Lsi06g01342 508 MobiDBLite consensus disorder prediction 65 98 - -
Lsi06g01342 508 Gene3D Actin; Chain A, domain 4 233 320 - -
Lsi06g01342 508 Gene3D - 203 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01342 K11340 ACTL6A, INO80K; actin-like protein 6A - zju:107417842 541.576
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01342 Lsi-Chr6:24001247 Lsi03g00810 Lsi-Chr3:12156301 4.58E-43 dispersed
Lsi06g01342 Lsi-Chr6:24001247 Lsi10g01374 Lsi-Chr10:17888505 3.05E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g349 . . . . . . . Bma12g00933 . . Cma10g00243 . Car10g00229 . . . . . . . . . . . Cla06g01479 Cam06g1633 Cec06g1696 Cco06g1690 Clacu06g1599 Cmu06g1548 Cre06g2360 . . . . . . . . . Blo15g00369 . . . . . . . . . . . . . . Cpe18g00750 . . . . . . . . . . . . . . Lsi06g01342 . Chy02g02375 Cme02g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009830 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01342 Lsi_Chr06 FPKM 0.0 6.586588 0.0 0.0 9.035649 0.0 0.0 0.0 0.0 0.0