Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01347 ATGACTTGGAGAAGAGTGTTGAAGTCCGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCTCACAGTTGGTGGGTTATATTTTTTCCACTTTGGGTGTTTCATGTGGCTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGTCATTGGGCACCGTGCCATGCTGTTGTTGCGACACCTTTGCTTATAGCATTTGAATTACTTCTTTGTATATACCTCGAGAGCCTATCTGTATCCAACAGGATATTGTTCTGTATGTTTATTGAGGCAATACTATTTCTGGCAGTTTATGGTTTTGCTGCTGTGAACTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTATTTTAATTGATAATTTCAGGTCACTGATGCCTGGTGACGATGAAAGCATGAGTGATGAGGCAATATGGGAGACGCTTCCTCACTTTTGGATTGCCATTTCAATGGTCTTCTTTGTCGCTGCTACAGTATTTACTCTACTGAAGCTATGTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTATTTATAAATTTTGGCATTGCCGAGTGCTTTGCGTTTCTTGTATGTACAAAGTGGTCTAATCCAGCGATTCATAGAAATATTCAAACACGAGAACGTTGTTCATCATCAGCAGTAGTTAGATATCTAGATTGGAACAGTGGTCTAATAGTTCATCCAGAGCAGGATCAGCATCAGGACAGAATGTGTGGCCTTCAAGACATTGGAGGCCATATCATGAAAATTCCCATAGTTGTTTTTCAAATCCTGCTCTGCATGTATTTAGAGGGAACACCTGCAGGTGCTAAAAGAATGCCACTTCCTGTCCTTTTCTCGCCCCTTTTTATATTGCAAGGTGCTGCTGTTATTTATGCTACATCTAGATTGTTAGAGAAAGCTGTACTTCTCTTAAGAGGCGGATCTGGCACAGCGTTGTATTTCAGTTTTTCAATTAGAGCTCATGCCTGCTTGGAGTTTTTTCATCATGGTTCAAGGCTATTGGGGTGGTGGTCAATTGATGAAGGCAGTCGAGAGGAGCAGGCACGATTGTACCATGAGGGTGCCTCTGGGTACAATACTTTTAGTGGATATCCTCCCGAGGTTGTGAAGAAGATGCCCAAGAAAGATCTTGCGGAGGAGTCATACAGGTCTGGCGCCTTCAAGCTGCACTTGGGGAGCAGACAGAAATCACCAAATACAGTCAGCAAGAATATGAAAGACTTCAAAATAATTTCATTATCAATGGTTATTCTTGTGGTCTCATTCTATCTTCCCTACTGGCATATCATTATGTTGAATTCATTGGTACCACCTGATGCTTTGGACAGGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGAGAAATTAGCGTGGTTCTTCTTCCGTGTAGGCATCGCGTACTATGCAGTTCCTGCTCTGAGAAGTGTAAAAAGTGCCCAATATGTCGCGTTGTCATCGAAGAACGGTTACCGATACTTTTTTCTCGTCGATCCAGATTGGTTCAGGCTGGAATTTGATTGTTACTGGGCTCGTCAGTTTAGGTTTGATCTTGAACAGGGTCAACTCATTGAGGAGTGCTACCCTCCAGACTGTCTTACTCTAGATGAGGAACTTGAAGTTGCATTTAGCTCGTTTCCTGATTCAATTTCGCAGCACCAGAACCGGTCAAGCATTCATGATTGTATATTCTTTTTCCGGCTTCGAAGAAAGGAGATTTCTCAACCAAGAAATGTTTCTTCTTCTGAGATAACTGAAGTGGATTCCAATGACTCAAAACTTCCAAGATCAAAAAGTAGCCTTGTTTCCAAGTCCAAGTACATGTATGGTTTTGTTTTTAATAGGCAGAGACACGATGAGAGGCTAAGAAGAGGTGGAGAGCAGAAGTCTGTGGTAATTCTGTCCCATAGTCCTTTTTCTACTGTCTTTAAACCTCTGTTGCAAATCATGGGTCCATTATTTTTTGACATTGGGAGGAGGGCTCTTGAGCATATTGCTGCTTATGTTTCAATGTGGCCTGCTCCTGTACCTGGTAAACAAATGGAGCTTCCTATTGGAAATGCCTTGCTTAAAGCACACTTGCCACCTGTTCATAGTCTGCCAATGGATGGTGAGACGTTTTCCGAAGAGTCTACATCCTCTATGGCTCCTTTTCTTCCCAATAATCAGTCTGTTCCACAGGGTCTTTTCCATGATTCTGATCTCTTTGGTACATTCCGGGGTCTTCTTTTGCAGCTCTGGCTGTTGTGGGAGCTGCAACTTATTGGTGAACCCATCCTTGTCATTGCACCAACGCCTCCACAGTGTTGTGAAGCTGTTGCTGGTCTTGTTAGCTTGGTTGCTCCTCTTCTTTGTAGTGTTGATTTTAGACCTTATTTCACCATTCATGACCCTGAGTTTTCACACTTAAACACACTTCAAGATGGAGCTACTTTCCCACCAATGGTTTTGGGGGTGACGAACCTCTTCTTCCTTAAAGCCCTTCGTAACATTCCTCATATTGTCTCAGTTGGAAACCCTGCTGTTAATCGGCTTGCCCAGACATCCAGGTCCGCTTCTGGCAGTGTTTCTGTCGCACCTGAAGGGTTTGGATTTCGGCAGCTGTCCTTGAAAAAATTCTCTCCGTCAAACTTGCTCAATGCTGTCAAGTTGAGGAGAGATGGTCCACTATGCCTCATGACAGAACATAAGGAAGCCATCTGGAGCACTTACCCTGCAGCAATGAAGCCAGACACATCGATCTTGAATCGGCTTATTGATGCTGGCTTATCACCAAGGGTTGAGGAGTCCATGTCTGTTGTTAATAATGAGATACTGCGTCGGCACTTCCTGGAACTTACCACCAATTTTTTGGCTCCTTTTGGGCCGTACTTTCGAACCACCACCCCTTCAGAAGGATGTTCTCCATTTGATGAGCCTTCTCACCCCCAATTTAGTGCTGATGAATTTCTTGCCAATCTATCAACAAGAGGTCCAGGAAAATTTCTGGCGAAGCGAATGAGATCTAACTGGCTGGATTTGTACAGGCGGTTTCTCAAAGGACCAAACTTTATGCCTTGGTTTCAGAGAAGGCGTGCTGTTGCAGAACAAGAACAGCATAGACTGTGGAGGCAAGCAAGAATGAATGCTGATGTACCACGGCTTATGTCTAAAATGCCTGAATTGGAAGTTGTCGATTTATTTAATGCTATTGAAAGACATCTTCTAAGAGAAACGGAGCTGCAGGAATCCAGGAGGGCTTATGCAGACTCTGTGGCAACTTGCCAGAAACTTAAAGGGGATCTGCTGACTGTTTTCAACGTGCTTCCTAAAGACATGCAACAGCTTTTGCTTCTTAATCCACAAAGGGCATCTCTTCTCCGCGGAAGTCCCGAATCCCCAAAACTTCCGGGGCGTCCACTTGTACAAGTTGGTGTATCACCAAGATAG 3495 44.03 MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVIFFPLWVFHVAVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCIYLESLSVSNRILFCMFIEAILFLAVYGFAAVNLKIVFLPLLAFEIIILIDNFRSLMPGDDESMSDEAIWETLPHFWIAISMVFFVAATVFTLLKLCGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRERCSSSAVVRYLDWNSGLIVHPEQDQHQDRMCGLQDIGGHIMKIPIVVFQILLCMYLEGTPAGAKRMPLPVLFSPLFILQGAAVIYATSRLLEKAVLLLRGGSGTALYFSFSIRAHACLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEVVKKMPKKDLAEESYRSGAFKLHLGSRQKSPNTVSKNMKDFKIISLSMVILVVSFYLPYWHIIMLNSLVPPDALDRKRCYVGFVSREKLAWFFFRVGIAYYAVPALRSVKSAQYVALSSKNGYRYFFLVDPDWFRLEFDCYWARQFRFDLEQGQLIEECYPPDCLTLDEELEVAFSSFPDSISQHQNRSSIHDCIFFFRLRRKEISQPRNVSSSEITEVDSNDSKLPRSKSSLVSKSKYMYGFVFNRQRHDERLRRGGEQKSVVILSHSPFSTVFKPLLQIMGPLFFDIGRRALEHIAAYVSMWPAPVPGKQMELPIGNALLKAHLPPVHSLPMDGETFSEESTSSMAPFLPNNQSVPQGLFHDSDLFGTFRGLLLQLWLLWELQLIGEPILVIAPTPPQCCEAVAGLVSLVAPLLCSVDFRPYFTIHDPEFSHLNTLQDGATFPPMVLGVTNLFFLKALRNIPHIVSVGNPAVNRLAQTSRSASGSVSVAPEGFGFRQLSLKKFSPSNLLNAVKLRRDGPLCLMTEHKEAIWSTYPAAMKPDTSILNRLIDAGLSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTTPSEGCSPFDEPSHPQFSADEFLANLSTRGPGKFLAKRMRSNWLDLYRRFLKGPNFMPWFQRRRAVAEQEQHRLWRQARMNADVPRLMSKMPELEVVDLFNAIERHLLRETELQESRRAYADSVATCQKLKGDLLTVFNVLPKDMQQLLLLNPQRASLLRGSPESPKLPGRPLVQVGVSPR 1164
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 24041140 24058079 - Lsi06G013470.1 Lsi06g01347 666077
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01347 1164 Pfam Transmembrane Fragile-X-F protein 28 307 IPR019396 -
Lsi06g01347 1164 PANTHER UNCHARACTERIZED 537 1138 IPR024224 GO:0005085
Lsi06g01347 1164 Pfam Stabilization of polarity axis 760 861 - -
Lsi06g01347 1164 ProSiteProfiles Tripartite DENN domain profile. 531 1044 IPR037516 -
Lsi06g01347 1164 MobiDBLite consensus disorder prediction 1143 1164 - -
Lsi06g01347 1164 MobiDBLite consensus disorder prediction 601 621 - -
Lsi06g01347 1164 PANTHER LD41638P 537 1138 - -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01347 - - csv:101216067 1192.18