Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01356 ATGGATGCTCGCCGCAGCTCCCGCGTCGTCAACCCCAAAGTTCGTCAGGTCGGATTCTTCACTCTCGACCCTCCTAATCCCCCCGGCCGCTCCCTCTCCGTTCCCGCCGACTGTGCCCCTTCTCAACAATCCCTCTCTCCTCCCTCCAATTCCTTGTCTCCTGTCATGATTCCCCCTGCCTGTCATCTATCCGATAACCTCGCTTCTCGATCTGCCGTTTTTCCTGTTCCAGCTCCCGCCAATTGGAGGGATTCCGCCGATCATATTCATGTTGGCAGCTATAACCCCTCCGAAATGCTGCTTGCTACGTCGCCTTCCAGTAGAATTGGGGACGAAGAGTTAGAGATGTCTGAGGATTCTTCCACCTCCGTTCCGTATCGCCGGAGTGGTCCCGGGAAGACTGCTTCGAGCTTTCCTGGCGTTGGAATCCACATGGCGGCTAAGTCGCCGAAGAATTCGCAGGCGCTGTTGGAACGTAATAAGCCTGTTGGAGTTGCAGAAAAGAATGGAGGGGCTTCCACAGAGGTACAGAATCGACAGCCACCATCAAATTCAAAACCCCTGAAGGCCAAAACGACAAAGGCTGAAAGACGAGCTCTACAGGAGGCACAACGAGCTGCAAAAGGTGAAGCGAAGAAGTCAGGTAACGCTCCTGGTAAAGCTGTGAAGCAGCCCTTGGCTATGAGAGATAGCACTGCCGCACCTTCGGTGGCATCTATTGACAAAAGAGGAGGTGATCGCACACATGATAAAGAAAGGAAGAAAGATGCTCCCCCTCCGCGAATGCAGTTTGATGATAAAAGCAGGGTAGAAAAGGCTAAAAAGCGAGCAGTTTTCAACCAAACTGAAGCTAGAAATAGGGTTGAATTATTTCGCCATTTGCCACAATACGAGCAGGGAACTCAGCTTCCTGATCTCGTGTCAAAGTTTTTCCAACTTGACCCCATTCATCCTGCCATTTACAAGTACAGGAGACCTTGGATTAATGAGATAATTGTCCACACTTTGAAGAAGAATACAAATAGGAAGTCCACCAGAATACAAAGCATCGACAACAATTCGAATGAGAAACTCATAGCTTCTCCACCTGTTGGTTTACAATATATGGCCGGCGATATATGTGGAGGCAATGCTCGTTGTATTGCTATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAGTCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTACGTGTCATTCTTCAACGAGTGCAGGCCACTATCTGTTAGCATGGGAAATGCAATTAGGTTTTTGAAAAACCTCATTGCCAAATTACCATTGAATCTTTCGGAATCTGAAGTAAAAGCTACACTCTGCTCAGATATCAATCGCTTTATCAATGAAAAGATTATAATTGCAGACGAGGTCATAGTTAGACATGCTGCTACCAAAATCAGGGATGGAGATGTTCTTCTCACATTTGGATCGTCATGTGCTGTAGAGATGCTTCTATTATATGCTCATGAGCTCGGAAAAGAATTTCATGTTGTGGTGGTGGATTCCCGTCCAAAACTAGAAGGGCAAGCATTGCTCCGTAGGCTTATAGGGAGGGGCCTGAGTTGTACATACACTCATATAAATGCTATTTCTTACGTGATGCACAAAGTAACACGTGTTTTTCTGGGGGCTGCTGCAGTATTATCTAATGGAACTGTTTATTCAAGAGTGGGTACTGCAGCTGTTGCCATGGTTGCTAATGCATTCCATGTTCCAGTCTTAATCTGCTGCGAAGCCTATAAATTCCATGAAAGGGTACAACTTGATTCAATATGTTTTAATGAATTAGGCGATCCAGATGCTATCTCAAAGGTTCCGGGAAGGAAGGATATTAATCATCTAGATAATTTGGCTGCTAAAGAACAACTGCAACATCTAAATTTAATGTATGATGCCACACCTTCAGATTACATCTCAATGATTGTCACAGATTATGGCATGCTTATCGCTTCTAGCATGAATGCTAGATACTTGTTTGTTGCATGTGATCGTGCAAGAAATAGCCGAAGAGCATGCTGCAAGGAGTTTTTTGAATCAATATCTGCACCTTGA 2097 45.54 MDARRSSRVVNPKVRQVGFFTLDPPNPPGRSLSVPADCAPSQQSLSPPSNSLSPVMIPPACHLSDNLASRSAVFPVPAPANWRDSADHIHVGSYNPSEMLLATSPSSRIGDEELEMSEDSSTSVPYRRSGPGKTASSFPGVGIHMAAKSPKNSQALLERNKPVGVAEKNGGASTEVQNRQPPSNSKPLKAKTTKAERRALQEAQRAAKGEAKKSGNAPGKAVKQPLAMRDSTAAPSVASIDKRGGDRTHDKERKKDAPPPRMQFDDKSRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDPIHPAIYKYRRPWINEIIVHTLKKNTNRKSTRIQSIDNNSNEKLIASPPVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNAIRFLKNLIAKLPLNLSESEVKATLCSDINRFINEKIIIADEVIVRHAATKIRDGDVLLTFGSSCAVEMLLLYAHELGKEFHVVVVDSRPKLEGQALLRRLIGRGLSCTYTHINAISYVMHKVTRVFLGAAAVLSNGTVYSRVGTAAVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDAISKVPGRKDINHLDNLAAKEQLQHLNLMYDATPSDYISMIVTDYGMLIASSMNARYLFVACDRARNSRRACCKEFFESISAP 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24139308 24145422 + Lsi06G013560.1 Lsi06g01356 666086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01356 698 MobiDBLite consensus disorder prediction 190 209 - -
Lsi06g01356 698 Pfam Initiation factor 2 subunit family 374 663 IPR000649 GO:0044237
Lsi06g01356 698 MobiDBLite consensus disorder prediction 171 189 - -
Lsi06g01356 698 SUPERFAMILY NagB/RpiA/CoA transferase-like 373 668 IPR037171 -
Lsi06g01356 698 MobiDBLite consensus disorder prediction 19 52 - -
Lsi06g01356 698 MobiDBLite consensus disorder prediction 36 51 - -
Lsi06g01356 698 MobiDBLite consensus disorder prediction 108 145 - -
Lsi06g01356 698 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 364 668 - -
Lsi06g01356 698 MobiDBLite consensus disorder prediction 242 272 - -
Lsi06g01356 698 MobiDBLite consensus disorder prediction 165 272 - -
Lsi06g01356 698 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 1 323 - -
Lsi06g01356 698 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 364 668 - -
Lsi06g01356 698 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 323 - -
Lsi06g01356 698 Gene3D - 468 672 IPR042529 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01356 Lsi-Chr6:24139308 Lsi09g00815 Lsi-Chr9:9337291 3.11E-07 dispersed
Lsi06g01356 Lsi-Chr6:24139308 Lsi06g01357 Lsi-Chr6:24147933 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01356 K03680 - csv:101214144 1120.92