Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01357 | ATGGATGCTCGCCGAAGCTCCCGCGTCGTCAACCCTAAAGTTCGTCAGGTCGGATTCTTCACTCTCGACCCTCCTAATCCCCCCGGCCGCTCCCTCTCCGGTCCCGCCGACTGTGCCCCTTCTCAACAATCCCTCTCTCCTCCCTCCAAATCCTTGTCTCCTGTCATGATTCCCCCTGCCCGTCATCTATCCGATAACCTCGCTTCTCGCTCTGCTGTTCTTCCTGTTCCAGCTCCCGCCAATTGGAGGGATTCCGCCGATCAGATTCATGTTGGCAGCTATAACCCCTCCGAAACGCTGCTTGCTACGTCGCCTTCCAGTAGAATTGGGGACGAAGAGTTAGAGATGTCCGAGGATTCTTCCACCTCCGTTCCATATCGCCGGAGTGGTCCCGGGAAGACTGCTTCGAGCTTTCCTGGCGTTGGAATCCACATGGCGGCTAAGTCGTCGAAGAATTCGCAGGCGCTGTTGGAACGTAATAAGCCTGTTGGAGTTGCAGAAAAGAATGGAGGGGCTTCCACAGAGGTACAGAATAGACAGCCACCATCAAATTCGAAACCTCTGAAGGCAAAAACGACAAAGGCTGAAAGACGAGCTCTACAGGAGGCACAACGAGCTGCAAAAGGTGAAGCGAAGAAGTCAGGTAACGCTCCTGGTAAAGCTGTGAAGCAGCCCTCGGCTATGAGAGATAGCACTGCCGCACCTTCGGTAGCATCTATCGACAAAAGAGGAGGTGATCGCACACATGATAAAGAAAGGAAGAAAGACGCTCCCCCTCCACGAATGCAGTTTGATGATAAAAGCAGGGTAGAAAAGGCTAAAAAGCGAGCAGTTTTCAACCAAACAGAAGCTAGAAATAGGGTTGAATTATTTCGCCATTTGCCACAATACGAGCAGGGAACTCAGCTTCCTGATCTCGTGTCAAAGTTTTTCCAACTTGACCCCATTCATCCTGCCATTTACAAGTACAGGAGACCTTGGATTAATGAGATAATTGTCCACACTTTGAAGAAGAATACAAATAGGAAGTCCACCAGAATACAAAGCATCGACAACAATTCGAATGAGAAACTCATAGCTTCTCCACCTGTTGGTTTACAATATATGGCCGGCGACATATGTGGAGGCAATGCACGTTGTATTGCTATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAGTCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTATGTGTCATTCTTCAACGAGTGCAGGCCACTGTCTGTTAGCATGGGAAATGCAATTAGGTTTTTGAAAAACCTCATTGCCAAATTACCATTGAATCTTCCGGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATCAATCGCTTTATCAATGAAAAGATTATAATTGCAGACGAGGTCATAGTTAGACATGCTGCTACCAAAATCAGGGATGGAGACGTTCTTCTCACATTTGGATCGTCATGTGCTGTAGAGATGCTTCTATTATATGCTCATGAGCTCGGAAAAGAATTTCGTGTTGTGGTGGTGGATTCCCGTCCAAAACTAGAAGGGCAAGCATTGCTCCGTAGGTTCATAGGGAGGGGCCTAAGTTGTACATACACTCATATAAATGCTATTTCTTACGTGATGCACAAAGTAACACGAGTTTTTCTGGGGGCTGCTGCAGTATTATCTAATGGAACTGTATATTCAAGAGTGGGAACTGCAGCTGTTGCCATGGTTGCTAATGCATTCCATGTTCCAGTCTTAATCTGCTGCGAAGCCTATAAATTCCATGAAAGGGTACAACTTGATTCAATATGTTTTAATGAATTAGGCGATCCAGATGCTATCTCAAAGGTTCCGGGAAGGAAGGATATTAATCATCTAGATAATTTGGCTGCTAAAGAACAACTGCAACATCTAAATTTAATGTATGACGCCACACCTTCAGATTACATCTCAATGATTGTCACAGATTATGGCATGCTTATCGCTTCCAGCATGAATGCTAGATACTTGTTTGTTGCATGTGATCGTGCAAGAAATAGCCGAAGAGCATGCTGCAAGGAGTTTTTTTAA | 2079 | 45.79 | MDARRSSRVVNPKVRQVGFFTLDPPNPPGRSLSGPADCAPSQQSLSPPSKSLSPVMIPPARHLSDNLASRSAVLPVPAPANWRDSADQIHVGSYNPSETLLATSPSSRIGDEELEMSEDSSTSVPYRRSGPGKTASSFPGVGIHMAAKSSKNSQALLERNKPVGVAEKNGGASTEVQNRQPPSNSKPLKAKTTKAERRALQEAQRAAKGEAKKSGNAPGKAVKQPSAMRDSTAAPSVASIDKRGGDRTHDKERKKDAPPPRMQFDDKSRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDPIHPAIYKYRRPWINEIIVHTLKKNTNRKSTRIQSIDNNSNEKLIASPPVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNAIRFLKNLIAKLPLNLPESEVKATLCSDINRFINEKIIIADEVIVRHAATKIRDGDVLLTFGSSCAVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRFIGRGLSCTYTHINAISYVMHKVTRVFLGAAAVLSNGTVYSRVGTAAVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDAISKVPGRKDINHLDNLAAKEQLQHLNLMYDATPSDYISMIVTDYGMLIASSMNARYLFVACDRARNSRRACCKEFF | 692 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 24147933 | 24153942 | + | Lsi06G013570.1 | Lsi06g01357 | 666087 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01357 | 692 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Lsi06g01357 | 692 | MobiDBLite | consensus disorder prediction | 190 | 209 | - | - | |
Lsi06g01357 | 692 | MobiDBLite | consensus disorder prediction | 171 | 189 | - | - | |
Lsi06g01357 | 692 | PANTHER | NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN | 1 | 323 | - | - | |
Lsi06g01357 | 692 | MobiDBLite | consensus disorder prediction | 89 | 273 | - | - | |
Lsi06g01357 | 692 | MobiDBLite | consensus disorder prediction | 242 | 273 | - | - | |
Lsi06g01357 | 692 | MobiDBLite | consensus disorder prediction | 89 | 106 | - | - | |
Lsi06g01357 | 692 | MobiDBLite | consensus disorder prediction | 36 | 51 | - | - | |
Lsi06g01357 | 692 | Pfam | Initiation factor 2 subunit family | 374 | 663 | IPR000649 | GO:0044237 | |
Lsi06g01357 | 692 | Gene3D | - | 468 | 672 | IPR042529 | - | |
Lsi06g01357 | 692 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B | 1 | 323 | - | - | |
Lsi06g01357 | 692 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B | 364 | 668 | - | - | |
Lsi06g01357 | 692 | PANTHER | NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN | 364 | 668 | - | - | |
Lsi06g01357 | 692 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 373 | 668 | IPR037171 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02858 | Lsi-Chr2:34804600 | Lsi06g01357 | Lsi-Chr6:24147933 | 6.52E-12 | dispersed | |
Lsi06g01357 | Lsi-Chr6:24147933 | Lsi09g00815 | Lsi-Chr9:9337291 | 4.79E-08 | dispersed | |
Lsi06g01356 | Lsi-Chr6:24139308 | Lsi06g01357 | Lsi-Chr6:24147933 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01357 | K03680 | - | csv:101214144 | 1125.15 |