Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01357 ATGGATGCTCGCCGAAGCTCCCGCGTCGTCAACCCTAAAGTTCGTCAGGTCGGATTCTTCACTCTCGACCCTCCTAATCCCCCCGGCCGCTCCCTCTCCGGTCCCGCCGACTGTGCCCCTTCTCAACAATCCCTCTCTCCTCCCTCCAAATCCTTGTCTCCTGTCATGATTCCCCCTGCCCGTCATCTATCCGATAACCTCGCTTCTCGCTCTGCTGTTCTTCCTGTTCCAGCTCCCGCCAATTGGAGGGATTCCGCCGATCAGATTCATGTTGGCAGCTATAACCCCTCCGAAACGCTGCTTGCTACGTCGCCTTCCAGTAGAATTGGGGACGAAGAGTTAGAGATGTCCGAGGATTCTTCCACCTCCGTTCCATATCGCCGGAGTGGTCCCGGGAAGACTGCTTCGAGCTTTCCTGGCGTTGGAATCCACATGGCGGCTAAGTCGTCGAAGAATTCGCAGGCGCTGTTGGAACGTAATAAGCCTGTTGGAGTTGCAGAAAAGAATGGAGGGGCTTCCACAGAGGTACAGAATAGACAGCCACCATCAAATTCGAAACCTCTGAAGGCAAAAACGACAAAGGCTGAAAGACGAGCTCTACAGGAGGCACAACGAGCTGCAAAAGGTGAAGCGAAGAAGTCAGGTAACGCTCCTGGTAAAGCTGTGAAGCAGCCCTCGGCTATGAGAGATAGCACTGCCGCACCTTCGGTAGCATCTATCGACAAAAGAGGAGGTGATCGCACACATGATAAAGAAAGGAAGAAAGACGCTCCCCCTCCACGAATGCAGTTTGATGATAAAAGCAGGGTAGAAAAGGCTAAAAAGCGAGCAGTTTTCAACCAAACAGAAGCTAGAAATAGGGTTGAATTATTTCGCCATTTGCCACAATACGAGCAGGGAACTCAGCTTCCTGATCTCGTGTCAAAGTTTTTCCAACTTGACCCCATTCATCCTGCCATTTACAAGTACAGGAGACCTTGGATTAATGAGATAATTGTCCACACTTTGAAGAAGAATACAAATAGGAAGTCCACCAGAATACAAAGCATCGACAACAATTCGAATGAGAAACTCATAGCTTCTCCACCTGTTGGTTTACAATATATGGCCGGCGACATATGTGGAGGCAATGCACGTTGTATTGCTATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAGTCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTATGTGTCATTCTTCAACGAGTGCAGGCCACTGTCTGTTAGCATGGGAAATGCAATTAGGTTTTTGAAAAACCTCATTGCCAAATTACCATTGAATCTTCCGGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATCAATCGCTTTATCAATGAAAAGATTATAATTGCAGACGAGGTCATAGTTAGACATGCTGCTACCAAAATCAGGGATGGAGACGTTCTTCTCACATTTGGATCGTCATGTGCTGTAGAGATGCTTCTATTATATGCTCATGAGCTCGGAAAAGAATTTCGTGTTGTGGTGGTGGATTCCCGTCCAAAACTAGAAGGGCAAGCATTGCTCCGTAGGTTCATAGGGAGGGGCCTAAGTTGTACATACACTCATATAAATGCTATTTCTTACGTGATGCACAAAGTAACACGAGTTTTTCTGGGGGCTGCTGCAGTATTATCTAATGGAACTGTATATTCAAGAGTGGGAACTGCAGCTGTTGCCATGGTTGCTAATGCATTCCATGTTCCAGTCTTAATCTGCTGCGAAGCCTATAAATTCCATGAAAGGGTACAACTTGATTCAATATGTTTTAATGAATTAGGCGATCCAGATGCTATCTCAAAGGTTCCGGGAAGGAAGGATATTAATCATCTAGATAATTTGGCTGCTAAAGAACAACTGCAACATCTAAATTTAATGTATGACGCCACACCTTCAGATTACATCTCAATGATTGTCACAGATTATGGCATGCTTATCGCTTCCAGCATGAATGCTAGATACTTGTTTGTTGCATGTGATCGTGCAAGAAATAGCCGAAGAGCATGCTGCAAGGAGTTTTTTTAA 2079 45.79 MDARRSSRVVNPKVRQVGFFTLDPPNPPGRSLSGPADCAPSQQSLSPPSKSLSPVMIPPARHLSDNLASRSAVLPVPAPANWRDSADQIHVGSYNPSETLLATSPSSRIGDEELEMSEDSSTSVPYRRSGPGKTASSFPGVGIHMAAKSSKNSQALLERNKPVGVAEKNGGASTEVQNRQPPSNSKPLKAKTTKAERRALQEAQRAAKGEAKKSGNAPGKAVKQPSAMRDSTAAPSVASIDKRGGDRTHDKERKKDAPPPRMQFDDKSRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDPIHPAIYKYRRPWINEIIVHTLKKNTNRKSTRIQSIDNNSNEKLIASPPVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNAIRFLKNLIAKLPLNLPESEVKATLCSDINRFINEKIIIADEVIVRHAATKIRDGDVLLTFGSSCAVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRFIGRGLSCTYTHINAISYVMHKVTRVFLGAAAVLSNGTVYSRVGTAAVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDAISKVPGRKDINHLDNLAAKEQLQHLNLMYDATPSDYISMIVTDYGMLIASSMNARYLFVACDRARNSRRACCKEFF 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24147933 24153942 + Lsi06G013570.1 Lsi06g01357 666087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01357 692 MobiDBLite consensus disorder prediction 1 57 - -
Lsi06g01357 692 MobiDBLite consensus disorder prediction 190 209 - -
Lsi06g01357 692 MobiDBLite consensus disorder prediction 171 189 - -
Lsi06g01357 692 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 1 323 - -
Lsi06g01357 692 MobiDBLite consensus disorder prediction 89 273 - -
Lsi06g01357 692 MobiDBLite consensus disorder prediction 242 273 - -
Lsi06g01357 692 MobiDBLite consensus disorder prediction 89 106 - -
Lsi06g01357 692 MobiDBLite consensus disorder prediction 36 51 - -
Lsi06g01357 692 Pfam Initiation factor 2 subunit family 374 663 IPR000649 GO:0044237
Lsi06g01357 692 Gene3D - 468 672 IPR042529 -
Lsi06g01357 692 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 323 - -
Lsi06g01357 692 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 364 668 - -
Lsi06g01357 692 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 364 668 - -
Lsi06g01357 692 SUPERFAMILY NagB/RpiA/CoA transferase-like 373 668 IPR037171 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02858 Lsi-Chr2:34804600 Lsi06g01357 Lsi-Chr6:24147933 6.52E-12 dispersed
Lsi06g01357 Lsi-Chr6:24147933 Lsi09g00815 Lsi-Chr9:9337291 4.79E-08 dispersed
Lsi06g01356 Lsi-Chr6:24139308 Lsi06g01357 Lsi-Chr6:24147933 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01357 K03680 - csv:101214144 1125.15