Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01359 ATGCCTGTTTCGACTCGGTCTCAGATCATGAACGAGGGACAGATTGATCCAATTCCAGGTCAAGAAGACAAACAGCAACTGAATCTTCCACCTAGAAATCTTCATCATGGATTGAAAGAGAAGATGAAGGCATTAACCCTTTTGTACGAGCAACAGAAGCTTGCTTCAGCAGCTCTTAAGAGACCGTCACCAAAAGGGGAAGATCTAAGATTCACAACGCATCCGAGCGTTGAGCTAAATGGTTCTTGTAAAAAAGAGGAGAAAGAACCGAAGCTTGAGAATGTAATGAGAGAAAATGCAATGCCTAATTCCACTGTTACAAGAACTTATGTTCTTCCCCAACCGCCGATGGCTGATGCAAAGGAAAATATGGTGGCTGGAACCGATAGGATTGTCGGGTTCTCGTGCTCGAAAAAGGCGAGTTTGTCGACGAATGTGGTGAGGAAATTGTCGTTAGGGAACTCAATGCCTGTGGTGGAAATGAAGGAGAATGTGGGGTCTAAGAAATTGCAAGAAATGGAGGAATTAGGGAGTTGTTCAGAGAAGGAGAGTTTGGGGGAAAGTCGGATTTTGGTGTTTGTGAGGCTGAGACCAATGGCTAAGAAGGAAAAGGAAGCGGGATCGAGGAGTTGTGTTAAAATAGTGAATAGAAGAGATCTTTATTTGACAGAGTTTGCTAATGAGAATGATTATTTGAGACTGAAGAGGCTTCGTGGACGCCATTTTACCTTCGACGCTTCATTTCCTGATACCACTAATCAGCAAGAAGTCTATTCCACCACGACAGCAGAGCTTGTAGAAGCAGTTCTGCAGGGAAGGAATGGTTCTGTATTCTGCTATGGTGCCACTGGGGCTGGAAAGACCTACACAATGCTAGGAACAGTTGAGAACCCTGGAGTTATGGTTTTGGCTATTAAAGATCTCTTCACCAAGATTAGGCAGAGGAGCTGTGATGGGAATCATACAGTCCACCTCTCTTACATTGAGGTCTACAATGAAACAGTCAGGGATTTGTTGTCCCCAGGAAGGCCATTAGTCCTCAGAGAAGATAAGCAGGGAATTGTTGCTGCTGGTCTTACACAATACAGAGCTTACTCCACAGATGAAGTGATGGCCTTGCTTCAGCGAGGAAACCAAAACCGAACAACTGAACCAACCCGTGTTAATGAAACTTCTTCGCGTTCCCATGCTATACTGCAGGTTACAGTTGAATATCGAGCCAGAGATGGTGGAATGAACGTTGTAAACCGAGCAGGGAAGCTCTCATTGATTGATCTTGCTGGGTCAGAGAGGGCACTTGCCACAGATCAGAGAACATTAAGATCTCTTGAGGGAGCAAACATAAACAGATCACTACTTGCTCTAAGTAGTTGCATCAATGCCCTTGTGGAAGGAAAGAAACACATACCTTATAGGAATTCAAAACTCACACAACTTCTGAAGGACTCATTAGGAGGAGCTTGTAATACTGTGATGATTGCAAATATTAGCCCAAGCAACCTATCATTTGGTGAAACCCAAAATACACTTCATTGGGCTGATCGTGCTAAAGAGATCAGAACTAAGGTTTCAGAAGCAAATGAGGAAATAATGAAGGCACCTGAATCTGAATCAGACCAGGCAAAACTACTGCTCGAATTGCAGAAAGAAAATCGTGAATTGCGTGTGCAGTTGGCTCGGCAGCAACAGAAGTTACTTACATTACAGGCACAATCCCTGGCTGCAGTTGCTTCTCCAACCCCATCTTCAGCCACATCTCTTCTAACTCCTCCAACATCTGTTCACCAAAATGAGAAACGAAAACCAAGATCATCCTTCTTGAATGGGAACTGTTTCACACCAGAATCTAGAAAGAAGGGTGTAGAGGAAGGAGTTAGAGAGCTTCGCCGCACAGTGAAACAATTAGAAGCTGAGCTTGAGAAGACAAAGAAAGAGCACGTTGTGCAGTTGAAGCAAAAAGATGATCTTATCAATGAGCTCTTGAAGAAAAGTGAAAGAACGGCAGGATTGGTGAGAGGAGAAGGGGTAAAGAGGGTACAGACAAGAACCAGCTTAAGACCAAAGGAGCCAAGCATAGGTGAACTGAAGAGCCCAAGCCACCGTTTCAAATCTCCAGCTCCAACAGCTAAGAAACGAAGCTTTTGGGACATAACAACAACTAATAGCCCATCTGTTGCCACATTAAATGGAAGGAAGACCAGAAGTCATGTACTTGCAGAGCCTCCTCCTACTGCTGCTCCCTCTATGCTTCGTCAGGTAGAGTTTCTCCTTTGA 2274 44.28 MPVSTRSQIMNEGQIDPIPGQEDKQQLNLPPRNLHHGLKEKMKALTLLYEQQKLASAALKRPSPKGEDLRFTTHPSVELNGSCKKEEKEPKLENVMRENAMPNSTVTRTYVLPQPPMADAKENMVAGTDRIVGFSCSKKASLSTNVVRKLSLGNSMPVVEMKENVGSKKLQEMEELGSCSEKESLGESRILVFVRLRPMAKKEKEAGSRSCVKIVNRRDLYLTEFANENDYLRLKRLRGRHFTFDASFPDTTNQQEVYSTTTAELVEAVLQGRNGSVFCYGATGAGKTYTMLGTVENPGVMVLAIKDLFTKIRQRSCDGNHTVHLSYIEVYNETVRDLLSPGRPLVLREDKQGIVAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRVNETSSRSHAILQVTVEYRARDGGMNVVNRAGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPSNLSFGETQNTLHWADRAKEIRTKVSEANEEIMKAPESESDQAKLLLELQKENRELRVQLARQQQKLLTLQAQSLAAVASPTPSSATSLLTPPTSVHQNEKRKPRSSFLNGNCFTPESRKKGVEEGVRELRRTVKQLEAELEKTKKEHVVQLKQKDDLINELLKKSERTAGLVRGEGVKRVQTRTSLRPKEPSIGELKSPSHRFKSPAPTAKKRSFWDITTTNSPSVATLNGRKTRSHVLAEPPPTAAPSMLRQVEFLL 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24161449 24166431 + Lsi06G013590.1 Lsi06g01359 666089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01359 757 MobiDBLite consensus disorder prediction 1 30 - -
Lsi06g01359 757 Coils Coil 618 652 - -
Lsi06g01359 757 Coils Coil 544 571 - -
Lsi06g01359 757 PANTHER KINESIN-LIKE PROTEIN 162 755 - -
Lsi06g01359 757 Pfam Kinesin motor domain 195 519 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi06g01359 757 PRINTS Kinesin heavy chain signature 469 490 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi06g01359 757 PRINTS Kinesin heavy chain signature 420 438 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi06g01359 757 PRINTS Kinesin heavy chain signature 386 403 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi06g01359 757 PRINTS Kinesin heavy chain signature 272 293 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi06g01359 757 ProSiteProfiles Kinesin motor domain profile. 189 519 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi06g01359 757 MobiDBLite consensus disorder prediction 580 595 - -
Lsi06g01359 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 564 IPR027417 -
Lsi06g01359 757 MobiDBLite consensus disorder prediction 580 612 - -
Lsi06g01359 757 SMART kinesin_4 187 527 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi06g01359 757 MobiDBLite consensus disorder prediction 688 710 - -
Lsi06g01359 757 ProSitePatterns Kinesin motor domain signature. 419 430 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lsi06g01359 757 Gene3D Kinesin motor domain 180 525 IPR036961 -
Lsi06g01359 757 PANTHER CENTROMERE PROTEIN E 162 755 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01359 K10401 KIF18_19; kinesin family member 18/19 - csv:101222937 1393.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00842 Lsi-Chr1:6715721 Lsi06g01359 Lsi-Chr6:24161449 3.48E-07 dispersed
Lsi02g02793 Lsi-Chr2:34155761 Lsi06g01359 Lsi-Chr6:24161449 7.35E-54 dispersed
Lsi06g01359 Lsi-Chr6:24161449 Lsi02g01384 Lsi-Chr2:18897382 5.47E-58 dispersed
Lsi09g01431 Lsi-Chr9:22315197 Lsi06g01359 Lsi-Chr6:24161449 3.04E-47 dispersed
Lsi06g01359 Lsi-Chr6:24161449 Lsi10g00409 Lsi-Chr10:6214377 1.28E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g379 . . Bda06g00496 . . . . Bma12g00945 . . Cma10g00258 . Car10g00243 . . . . Bhi02g00015 . . . . . . Cla06g01495 Cam06g1649 Cec06g1709 Cco06g1707 Clacu06g1615 Cmu06g1564 Cre06g2376 . . Cone13ag0006 Cone19ag0005 . . . . . Blo15g00357 . . Bpe07g00737 . . Bma08g00253 . Cmo10g00275 . . . . . . Cpe18g00737 . . . . . . . . . . . . . . Lsi06g01359 Csa01g00353 Chy02g02390 Cme02g01775
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007142 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01359 Lsi_Chr06 FPKM 0.0 0.0 0.0 0.0 1.043707 0.0 0.0 4.803648 2.32361 4.832814