Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01361 ATGGTACCATGGAAACGGTTCCATAAACAGTCGGTTTTTCTTTTGTACTGCAATTTCATCTTACTTCGAGCCTCTTCCCCTTTCTTCTTTTTCCTTTGCTGCCTTCGAGTCGGTTTTGCGACTATGACCAAAATAATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCGTATGAACAACACAGGCTCGAAACTATGCAAGACTCATTGAAAGGTGGGAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCCGAGGCACGTGCAAGAATGAATGGCAGTAGCACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 534 44.19 MVPWKRFHKQSVFLLYCNFILLRASSPFFFFLCCLRVGFATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSSTAPKQPEPEQSLES 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24173027 24175870 - Lsi06G013610.1 Lsi06g01361 666091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01361 177 PANTHER PROTEIN DR1 HOMOLOG 40 176 - -
Lsi06g01361 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 100 IPR003958 -
Lsi06g01361 177 PANTHER PROTEIN DR1 HOMOLOG 40 176 IPR044255 -
Lsi06g01361 177 SUPERFAMILY Histone-fold 39 162 IPR009072 GO:0046982
Lsi06g01361 177 MobiDBLite consensus disorder prediction 161 177 - -
Lsi06g01361 177 MobiDBLite consensus disorder prediction 154 177 - -
Lsi06g01361 177 Gene3D Histone, subunit A 38 165 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01361 K21751 DR1, NC2-beta; down-regulator of transcription 1 - csv:101214627 266.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01361 Lsi-Chr6:24173027 Lsi10g00042 Lsi-Chr10:648177 1.27E-14 dispersed
Lsi06g01361 Lsi-Chr6:24173027 Lsi03g02057 Lsi-Chr3:31884978 9.81E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g381 . Blo16g00147 . Bda15g00650 Bpe12g00503 . . . . . Cma10g00260 . Car10g00245 . Sed08g0326 . . Bhi02g00018 Tan09g1961 Cmetu02g0654 . . . . Cla06g01497 Cam06g1651 Cec06g1711 Cco06g1709 Clacu06g1617 Cmu06g1566 Cre06g2378 . . Cone13ag0008 Cone19ag0007 . . . . . . . Bda14g00905 . Bpe15g00553 Bma03g00879 . . Cmo10g00278 . . . . . . . . . . . . . . . . . . . . . Lsi06g01361 Csa01g00351 Chy02g02392 Cme02g01777
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g01361 . 40 170 CCAAT-DR1 Transcription Factor Family AT5G08190 83.2 1.8e-53 205.7
Lsi06g01361 . 40 172 CCAAT-DR1 Transcription Factor Family AT5G23090 82.0 1.0e-56 216.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25529 PF00808 CBFD_NFYB_HMF 1.30E-19 CL0012 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01361 Lsi_Chr06 FPKM 40.759876 45.722027 50.873062 52.833916 56.51915 57.271076 58.530411 124.392525 120.294357 113.681099