Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01361 ATGGTACCATGGAAACGGTTCCATAAACAGTCGGTTTTTCTTTTGTACTGCAATTTCATCTTACTTCGAGCCTCTTCCCCTTTCTTCTTTTTCCTTTGCTGCCTTCGAGTCGGTTTTGCGACTATGACCAAAATAATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCGTATGAACAACACAGGCTCGAAACTATGCAAGACTCATTGAAAGGTGGGAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCCGAGGCACGTGCAAGAATGAATGGCAGTAGCACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 534 44.19 MVPWKRFHKQSVFLLYCNFILLRASSPFFFFLCCLRVGFATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSSTAPKQPEPEQSLES 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24173027 24175870 - Lsi06G013610.1 Lsi06g01361 666091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01361 177 PANTHER PROTEIN DR1 HOMOLOG 40 176 - -
Lsi06g01361 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 100 IPR003958 -
Lsi06g01361 177 PANTHER PROTEIN DR1 HOMOLOG 40 176 IPR044255 -
Lsi06g01361 177 SUPERFAMILY Histone-fold 39 162 IPR009072 GO:0046982
Lsi06g01361 177 MobiDBLite consensus disorder prediction 161 177 - -
Lsi06g01361 177 MobiDBLite consensus disorder prediction 154 177 - -
Lsi06g01361 177 Gene3D Histone, subunit A 38 165 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01361 Lsi-Chr6:24173027 Lsi10g00042 Lsi-Chr10:648177 1.27E-14 dispersed
Lsi06g01361 Lsi-Chr6:24173027 Lsi03g02057 Lsi-Chr3:31884978 9.81E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25529 PF00808 CBFD_NFYB_HMF 1.30E-19 CL0012 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01361 K21751 - csv:101214627 266.159