Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01363 ATGGAATCGGACGAAGAAGATTTCATTTTCTATGGAACCCCAATTGAGCGGGAGGAAGAGATCAACAGCCGTAAAAAGAAATCTGTGGCTGACGCTTCGGGTACCATGCGAAGCCTCCCACACTGGAAACAAGAGGTTAGAGATGAGGAAGGGCGTAGAAGATTTCATGGGGCATTCACTGGAGGATTTTCTGCTGGCCATTACAATACAGTGGGCTCAAAAGAAGGTTGGACTCCACAGTCATTTACGTCGTCCCGAAAGAATCGAGCTGAAGTCAAGCAGCAAAACATTTTAAATTTCTTAGACGAAGATGAAAAAGCTGAATTGGAAGGTGGAGGCCTGGGGACATCTTCTCAGTTTGATACATTTGGGTTCACAGCAGTAGAGCTTGCTCGTAAACAAGCTGACAAGGAGCAACAACAGAGGCCGTCTGCTATACCTGGACCTGTTCCTGATGAATTAATTGTTCCAGCTGCAGAATCCATAGGCAAGGAAATCACAGAGTCTTCAAAAGACAAGGAAAGTTCTTTTGATAGGTTTTGTGACATTGAACAGTTTATGGATATCACACTGTTTTCTGATAGATATCTAATCGAATGTGTTTTCGCATTGAAAGTAAATGATCAGCCACTTTTAGTTACCTATCAAGCTAACTACCACAACTTGTTCACTACAGATGCTCGAAGAGATGCGCGAAAAGCATTTCTAGCATTTTCAACGGGTGATGCCAAATCGGAAATCCCCAATTCTGAACCATTTCAGGAGGATGATGATATTGTTTCTCCTCAACCTGCCAAGGGTGATATTTCGTCTTCTCAAAGCACACCAGTTTATGTGATCAACCCAAAACAGGATTTGCATGGTTTAGGTTTTGATCCTTACAAGCATGCACCGGAGTTTAGGGCTGAGAGGATTGCTTCTGGCTTTGGCATTGGTGCACTTGAAGAACTTGATGTTGAAGATGAGGATGTTTATACCTCTGGTCAGTATGTGAACAGTTTTGTGGTATATCCTCATTGTGATGCAGGTCATGTGGATTGTCCTGTGAAATTAGTGAAGGTGAGCTCTGAATATTACTCGGAATATGATGATAAGCACCATCCTTTATACTTTATTAAGGTTCTTACCATCATGCCGTTTCCTCATTGCTTTTTGTTGGCAGGATATGAGTTTGAGGAAACATACGTACAAGAAGACGATGAGCCACCTTCTAAATTGATCACAGATGGCAAACAAAAGTTGATTGGAAAAAAAGTTGAGGGTGTCTTGCTTGGATTTAGAGTTGCCTCGAAATCTGACTACCAGTTGGAGAGGTTTGATCCTCCTGTAATACCTAAGGACTTCATACCCCAGCACAAATTTGCAGGGCCTCTCAATGGTGGCTATAAGCTTGCTGACACCCCTCCTGTCGAGGTTCCTCCTCCTGAGGATAATAATCTGAAACTTCTAATTGAAGGGGTGGCGACTTTGGTTGCTCGCTGTGGAAAACTATTTGAGGATCTCTCTAGAGAAAAAAATAAGTCAAATCCATTATTTAGTTTTCTTAATGGAGGAATTGGCCATGAATATTATTCAAGGAAGCTATGGGAGGAGCAAATGAAGCGTGTGGACCAACCTAAGCCTCAATTTGATGATAAATTGTCCCCAAGCTTGGAGAAGATGACAGCTGAAAGTCGTGGAAAAATCCTTGGTGAAAAGCCTTTGGCAAGAAGCTCTAAAGAGTTAAATCCACCTGCGACTTCTGATGGCGTGCACGGTGGGATGCCAGAGGTTGTCAAACCTTTCAGGGATGATCCAGCTAAGCAAGAAAGATTTGAGCATTTTTTAAAGGAAAAGTATCAAGGAGGCCTGCGCACTAGTGCCCCTGTTGGAGCTATTGATATGTCAGAAGCAGCTCGTGCGCGTGAACGCTTGGACTTTGAGGCTGCTGCAGAGGCAATTGAGAAAGGGAAAGGGTTGAAAGAAGCTAAGCTCTCTGCCGAGCACTTTGTGGATTTTTTAGCCACTGGAGGAATGCAGTTTACCTCTGGTGGTGTAGAGGAAGCCAAAGATACGAAGCTAGAAGGTTTAATGATGGAGAAAATGTTCCCAAAACGAGAAGAATATCAGTGGCGTCCTGCTCCTATTCTGTGCAAGCGGTTTGATCTCATTGATCCCTACATGGGGAAGCTACCACCTGCTCCTAGGATGAGGAGCAAGTTGGATACACTTATTTTCACATCAAATTCTGTCAAATCGACAAAGATTGAAGAAGCTTTAACATCAACCCCTTCTTCATTACCTCAATCGAATGCTGAAGTAAAAGACAAAGATGATGCATCTGAAAATGTAAATGAAAAAGTAGAAGTTGAATGTGTTGATCGGCCTGTTGATCTATATAAGGCTATTTTCTCTGATGAGTCAGAAGATGAAGAGGGTACATCAACTCTCAAGCAAGCCGAGGATCCTAAAAAGAAAGTTGAAGTGGCTAATACAACACTAAACCGTTTAATTGCGGGTGACTTTCTGGAATCTTTGGGTAAAGAACTGGGCTTGGAAGTTCCTCCAGATCTGCCTCCATCAAAGAAAGGCCAAACTGCAGCTCCTCAGACAGAAGCTGTACCTGTAGGTGAACAAAAGACCAATATCCTTTCAGTTGAAGATAAGCCTTATCCCACCCCATCTACCACTGGGATTCTATCAGAGCATCGAATGACAGGCACCACGGAACTTGATCTAAATGGCAGAAAAGAAGACAATGAACTCAATCATAACTCGGCTGGAAGTGGTGGTAAAATTATGGAGACCAGTTCTTCCAAGAAAACTTTGGGTAAAGTTTATGAAGAAAAGATGTTTAAGGACAAGGGGGATAGGAAGGTTTACAACAGGCGAGTTGACGACATTCATCGTGATTGTAGCAACAGCTCATCATCGGAAGATGAAAAGAGAAGAAAACGTTCAAGGAGGCGCAGGTATAAAAGTAGCGACTCAGAGGATAGTGCATCAAGTGATTATCGTACGAAAGAGCACTCTAGATCACGAGATAGAAAGAAAGGATCTTCTCAAGAAAAGAAGAGCCGGAGAAAACACTCAAAACATCACAAGCACAGACATAGAGATTCTTCCCCCAGAGATCATCGCTCTGGAAAAGATCGTACAGCATCCGAGAGAGAGAAACATAGACGGAGAGATTGA 3174 42.85 MESDEEDFIFYGTPIEREEEINSRKKKSVADASGTMRSLPHWKQEVRDEEGRRRFHGAFTGGFSAGHYNTVGSKEGWTPQSFTSSRKNRAEVKQQNILNFLDEDEKAELEGGGLGTSSQFDTFGFTAVELARKQADKEQQQRPSAIPGPVPDELIVPAAESIGKEITESSKDKESSFDRFCDIEQFMDITLFSDRYLIECVFALKVNDQPLLVTYQANYHNLFTTDARRDARKAFLAFSTGDAKSEIPNSEPFQEDDDIVSPQPAKGDISSSQSTPVYVINPKQDLHGLGFDPYKHAPEFRAERIASGFGIGALEELDVEDEDVYTSGQYVNSFVVYPHCDAGHVDCPVKLVKVSSEYYSEYDDKHHPLYFIKVLTIMPFPHCFLLAGYEFEETYVQEDDEPPSKLITDGKQKLIGKKVEGVLLGFRVASKSDYQLERFDPPVIPKDFIPQHKFAGPLNGGYKLADTPPVEVPPPEDNNLKLLIEGVATLVARCGKLFEDLSREKNKSNPLFSFLNGGIGHEYYSRKLWEEQMKRVDQPKPQFDDKLSPSLEKMTAESRGKILGEKPLARSSKELNPPATSDGVHGGMPEVVKPFRDDPAKQERFEHFLKEKYQGGLRTSAPVGAIDMSEAARARERLDFEAAAEAIEKGKGLKEAKLSAEHFVDFLATGGMQFTSGGVEEAKDTKLEGLMMEKMFPKREEYQWRPAPILCKRFDLIDPYMGKLPPAPRMRSKLDTLIFTSNSVKSTKIEEALTSTPSSLPQSNAEVKDKDDASENVNEKVEVECVDRPVDLYKAIFSDESEDEEGTSTLKQAEDPKKKVEVANTTLNRLIAGDFLESLGKELGLEVPPDLPPSKKGQTAAPQTEAVPVGEQKTNILSVEDKPYPTPSTTGILSEHRMTGTTELDLNGRKEDNELNHNSAGSGGKIMETSSSKKTLGKVYEEKMFKDKGDRKVYNRRVDDIHRDCSNSSSSEDEKRRKRSRRRRYKSSDSEDSASSDYRTKEHSRSRDRKKGSSQEKKSRRKHSKHHKHRHRDSSPRDHRSGKDRTASEREKHRRRD 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24193743 24206296 + Lsi06G013630.1 Lsi06g01363 666093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 752 778 - -
Lsi06g01363 1057 Pfam Protein of unknown function (DUF1604) 39 110 IPR011666 GO:0006397
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 21 50 - -
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 985 1013 - -
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 536 568 - -
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 844 1057 - -
Lsi06g01363 1057 ProSiteProfiles SURP motif repeat profile. 483 527 IPR000061 GO:0003723|GO:0006396
Lsi06g01363 1057 SUPERFAMILY Surp module (SWAP domain) 462 533 IPR035967 GO:0003723|GO:0006396
Lsi06g01363 1057 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 1038 - -
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 935 976 - -
Lsi06g01363 1057 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 1038 - -
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 917 934 - -
Lsi06g01363 1057 Gene3D Surp module 461 536 IPR035967 GO:0003723|GO:0006396
Lsi06g01363 1057 SMART surpneu2 481 533 IPR000061 GO:0003723|GO:0006396
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 1037 1051 - -
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 1014 1036 - -
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 902 916 - -
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 536 587 - -
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 879 901 - -
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 68 88 - -
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 71 88 - -
Lsi06g01363 1057 Pfam Surp module 483 530 IPR000061 GO:0003723|GO:0006396
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 246 273 - -
Lsi06g01363 1057 MobiDBLite consensus disorder prediction 798 817 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01363 K13123 GPATCH1; G patch domain-containing protein 1 - csv:101222702 1500.72
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g384 . . . . . . . . . . . . . . . . Cpe04g01420 Bhi02g00019 Tan09g1962 . . Hepe09g0315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01363 . Chy02g02393 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009521 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01363 Lsi_Chr06 FPKM 1.278213 1.726065 2.992955 3.900787 6.806685 5.958719 6.733021 1.320807 1.398306 1.189824
Lsi06g01363 Lsi_Chr00 FPKM 1.355013 1.662158 2.735723 3.419388 5.168388 5.348374 5.066182 1.29963 1.130154 0.982941