Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01369 ATGGCTTCTCTTCCTTCCCCACCCACCATGAATCTCCTCGAAAAATCCTTCCTTTCTTCAACATCTCAATCTTTCATTACCTCAATACCCTCTTCTTCTTCTTCTTCTTCGAAACCCCTTGGCTCCCATGCTATTCGATGTTCTGTTGCTGTGGCGCCTTCTGCTTCCACCAAGGTCTCGAAGGAATTCAAGTTGAAGTCCGTGAAGGCTCGGCAGATCATTGACAGTAGAGGCAATCCCACGGTCGAGGTTGATTTGATTACTGACGATCTCTACCGATCCGCTGTCCCCAGCGGGGCTTCCACTGGGATCTATGAGGCTTTGGAGCTTAGAGATGGGGATAAAACTGTTTATGGAGGTAAAGGTGTGCTTACTGCTGTTAAGAACATCAATGATATATTGGCTCCTAAGCTCGTTGGCGTCGATGTCAGGAATCAAGAAGAAGTTGATGCTATCATGCTGGAAATTGATGGAACCCCAAACAAGTCGAAACTTGGGGCAAATGCTATACTAGGAGTTTCTTTGAGCGTCTGCAGAGCTGGTGCTGGCGCCAAGGGACTGCCATTGTATCGGCACATCCAAGAATTATCAGGCACCAAGGAACTTGTTATGCCAGTTCCTGCTTTTAATGTCATAAATGGGGGTAGCCATGCTGGAAATAATCTAGCAATGCAAGAATTTATGATCTTACCTGTAGGAGCTACATCTTTCGCAGAGGCACTTCGCATGGGAAGTGAAGTTTATCACACACTGAAGGGAATTATTAAAGCAAAATATGGACAAGATGCCTGCAATGTTGGAGATGAGGGTGGATTCGCTCCAAATGTTCAAGATAACAGAGAAGGACTGGTGTTGCTTATTGATGCCATTGAAAAGGCTGGTTATACAGGAAAGATCAAAATAGGAATGGATGTTGCAGCTTCAGAGTTTTTCACTAAAGAGGGAAAATATGATCTGAACTTCAAGAAACAGCCAAATGATGGAGCTCATGTTCACTCAGCTCATGGCCTTGGCGAACTCTATAAACAGTTTGTCAAAGATTTTCCCATTGTTTCCATCGAGGACCCCTTTGATCAAGATGATTGGAGCTCCTGGGCTTCTCTACAATCTTCTGTTGATATCCAACTTGTGGGAGATGACTTGCTGGTAACAAATCCAAAGAGAATTGCCGAAGCCATTCAGAAAAAAGCTTGCAATGCTTTACTTCTGAAGGTTAACCAGATTGGATCAGTGACTGAATCAATTCAAGCTGCTCTTGATTCCAAGGCTGCTGGCTGGGGAGTGATGGTCAGCCACCGAAGTGGTGAAACTGAAGATAATTTTATTGCTGATCTTTCTGTTGGCTTAGCTAGTGGACAGATTAAAACTGGAGCTCCATGCCGAAGTGAACGGTTAGCGAAATATAATCAGCTTCTTCGAATTGAAGAAGAACTTGGCAGTGTTCGATATGCTGGTGCGTCTTTCAGATCACCTTAG 1476 44.31 MASLPSPPTMNLLEKSFLSSTSQSFITSIPSSSSSSSKPLGSHAIRCSVAVAPSASTKVSKEFKLKSVKARQIIDSRGNPTVEVDLITDDLYRSAVPSGASTGIYEALELRDGDKTVYGGKGVLTAVKNINDILAPKLVGVDVRNQEEVDAIMLEIDGTPNKSKLGANAILGVSLSVCRAGAGAKGLPLYRHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHTLKGIIKAKYGQDACNVGDEGGFAPNVQDNREGLVLLIDAIEKAGYTGKIKIGMDVAASEFFTKEGKYDLNFKKQPNDGAHVHSAHGLGELYKQFVKDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKACNALLLKVNQIGSVTESIQAALDSKAAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELGSVRYAGASFRSP 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24266524 24270211 + Lsi06G013690.1 Lsi06g01369 666099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01369 491 SMART Enolase_N_3 65 193 IPR020811 -
Lsi06g01369 491 CDD enolase 67 477 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Lsi06g01369 491 Pfam Enolase, C-terminal TIM barrel domain 202 489 IPR020810 -
Lsi06g01369 491 Pfam Enolase, N-terminal domain 66 193 IPR020811 -
Lsi06g01369 491 PANTHER ENOLASE 29 491 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Lsi06g01369 491 PANTHER ENOLASE 1, CHLOROPLASTIC 29 491 - -
Lsi06g01369 491 ProSitePatterns Enolase signature. 401 414 IPR020809 -
Lsi06g01369 491 TIGRFAM eno: phosphopyruvate hydratase 66 487 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Lsi06g01369 491 SFLD enolase 66 478 - -
Lsi06g01369 491 Gene3D - 187 491 IPR036849 -
Lsi06g01369 491 Gene3D - 59 186 IPR029017 -
Lsi06g01369 491 SFLD enolase 66 478 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Lsi06g01369 491 SUPERFAMILY Enolase C-terminal domain-like 201 484 IPR036849 -
Lsi06g01369 491 SUPERFAMILY Enolase N-terminal domain-like 65 196 IPR029017 -
Lsi06g01369 491 SMART Enolase_C_3 201 491 IPR020810 -
Lsi06g01369 491 Hamap Enolase [eno]. 63 478 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Lsi06g01369 491 PRINTS Enolase signature 166 182 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Lsi06g01369 491 PRINTS Enolase signature 223 236 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Lsi06g01369 491 PRINTS Enolase signature 401 415 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Lsi06g01369 491 PRINTS Enolase signature 378 389 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Lsi06g01369 491 PRINTS Enolase signature 96 110 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Lsi06g01369 491 PRINTS Enolase signature 430 447 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01369 K01689 ENO, eno; enolase [EC:4.2.1.11] - csv:101209516 893.264
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01254 Lsi-Chr1:10725502 Lsi06g01369 Lsi-Chr6:24266524 0 dispersed
Lsi02g01311 Lsi-Chr2:17521966 Lsi06g01369 Lsi-Chr6:24266524 1.31E-130 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g393 . . . . . . . . . . . . . Car11g00221 Sed12g2041 . Cpe04g01430 Bhi02g00032 Tan09g1975 Cmetu02g0279 . Hepe09g0308 . . Cla06g01505 Cam06g1660 Cec06g1722 Cco06g1717 Clacu06g1626 Cmu06g1575 Cre06g2385 . . Cone13ag0013 Cone19ag0011 . . . . . . . Bda14g00902 . Bpe15g00556 Bma03g00876 . . . Cmo11g00246 . . . . . . . . . . . . . . . . . . . . Lsi06g01369 Csa01g00309 Chy02g02429 Cme02g01786
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011033 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01369 Lsi_Chr06 FPKM 1.662564 2.142345 19.860432 24.864248 197.145462 197.851715 154.904724 12.792163 14.228768 13.473657