Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01370 ATGTTCTCAAAAACCCAAAAAGCGACGGATAAGATCAGGCTATTTTTGCAAAACAAGGTCGATTGCTCAGTGTTTCTTCGGTTCTTGAGCATGAGCCACAAGAAGAGCTCCAAAATTCAGGCTATCTACGACCTCTACACGGTTGGCCCGGGGGATGTTGGGCTTAAAGAAGAGAATGTTGATGACGACCGAGGGCATGGGCTTTTTGGACTGAGCCAATTGAATAGGATAGCTCGATGGGCTCAACCAATAACATATGTTGACATATTTGAATGTGAAAGTTTTACGATATGTATATTCTGCTTTCCAACTTCTTCCGTCATCCCACTTCATGACCATCCTGGGATGACTGTGTTCAGCAAAGTTCTCTATGGTTCTCTTCATGTAAAAGCCTATGACTGGGTTGAACCTCCCTTCATTCAGGAAAGCAAGGGCTCCACTTATTTTCCAGGTTTGATTTCGCATGCCAACTTGTTTCAGGATATTATATTGTGCACAAGGCTGGCTAAGTTAGCAGTTGATAAAGTTCTAACCGCATCAAGTGCGACGTCAGTTTTGTACCCAAAGGCCGGAGGCAATCTGCATTGTTTCACAGCAGTTTCGCCTTGTGCCGTGCTTGATGTCCTTTCGCCTCCTTATAATGAAGATAAAGGAAGAAGATGTACATACTACCATGACTATCCTTATTCAACTATTTCTGCAGATTCCAAACCCAATCTAAATGAAGAAGAAGAAGAAGAAGATTATGCCTGGCTTGCAAAAATCGAGACCCCTGATGATCTATATATGCGACCTGGAATGTATGCTGGCCCCGCTATTCAAATTTAG 828 43.0 MFSKTQKATDKIRLFLQNKVDCSVFLRFLSMSHKKSSKIQAIYDLYTVGPGDVGLKEENVDDDRGHGLFGLSQLNRIARWAQPITYVDIFECESFTICIFCFPTSSVIPLHDHPGMTVFSKVLYGSLHVKAYDWVEPPFIQESKGSTYFPGLISHANLFQDIILCTRLAKLAVDKVLTASSATSVLYPKAGGNLHCFTAVSPCAVLDVLSPPYNEDKGRRCTYYHDYPYSTISADSKPNLNEEEEEEDYAWLAKIETPDDLYMRPGMYAGPAIQI 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24270261 24273433 - Lsi06G013700.1 Lsi06g01370 666100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01370 275 Pfam PCO_ADO 48 273 IPR012864 GO:0016702
Lsi06g01370 275 CDD cupin_ADO 93 214 - -
Lsi06g01370 275 PANTHER UNCHARACTERIZED 24 274 IPR012864 GO:0016702
Lsi06g01370 275 SUPERFAMILY RmlC-like cupins 80 234 IPR011051 -
Lsi06g01370 275 Gene3D Jelly Rolls 72 238 IPR014710 -
Lsi06g01370 275 PANTHER 2-AMINOETHANETHIOL DIOXYGENASE 24 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01370 K23953 PCO; plant cysteine oxidase [EC:1.13.11.-] - csv:101209759 465.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01370 Lsi-Chr6:24270261 Lsi10g01598 Lsi-Chr10:20475069 1.24E-54 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g394 . Blo16g00149 . . . Bpe13g00331 Bma06g00010 . . . Cma10g00265 . Car10g00249 . Sed08g0320 . . Bhi02g00034 Tan09g1976 Cmetu02g1790 . . . . Cla06g01506 Cam06g1661 Cec06g1723 Cco06g1718 Clacu06g1627 Cmu06g1576 Cre06g2386 . . Cone13ag0014 Cone19ag0012 . . . . . . . . . . . . . Cmo10g00282 . . . . . . Cpe18g00732 . . . . . . . . . . . . . . Lsi06g01370 Csa01g00312 Chy02g02428 Cme02g01787
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005781 2 4 2 3 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01370 Lsi_Chr06 FPKM 7.69874 8.374077 11.724428 11.969003 6.056899 5.467791 5.896033 6.013146 5.734586 6.972301
Lsi06g01370 Lsi_Chr00 FPKM 5.35929 6.523554 10.495799 11.442035 0.0 0.0 0.0 1.314686 1.550115 1.263491