Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01371 ATGGAAGGAAGTAAAGGCGAAGCAGTATTCGATTCACTGAATCTGAATCCACAGCTCTTCATTAATGAAGCTCTCAATATTGTCGACGATTTGGTTGATGACGCTTTTGATTTCTATCAATCACAAGCATCGGCCGCCTTGAAGACCGAGGGCTCCGATAGATCCCAGGATCTTACCCTGGTAAGGGAATATCGCGGGTCCGAACCTTGGTCCAATTGGGTCTGGATAAGCGGTTGGCCATGTGGGAGAAGTACTGTCTCAATCATTGTTTTTCAGTTCCTGAAGGATGAATCACCTGGTGTCACTTCAATAAGTCATGACTATGACGTGGATCTGGATACAGAGTTAGATTTTTTGAGGAATAAGCTCTCTGAGGCCAGAAAAGAGAATATTGTATTGAGCCAAGAACTACAAGCTTTGGAAAGGCAAACTGCTTCCAGTAACTCCCAAATCAATCATTTGAACGAAGCATTACAATTATATGAGCAAAATTCTGTGAATGAGATGTTCCAGGGTTTCTTTAATGCTAAGCTGGATGATATTCAAGAATTTTTAGCTGATTTGAAGACCCTTTGA 576 41.67 MEGSKGEAVFDSLNLNPQLFINEALNIVDDLVDDAFDFYQSQASAALKTEGSDRSQDLTLVREYRGSEPWSNWVWISGWPCGRSTVSIIVFQFLKDESPGVTSISHDYDVDLDTELDFLRNKLSEARKENIVLSQELQALERQTASSNSQINHLNEALQLYEQNSVNEMFQGFFNAKLDDIQEFLADLKTL 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24275866 24279262 + Lsi06G013710.1 Lsi06g01371 666101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01371 191 Coils Coil 109 157 - -
Lsi06g01371 191 PANTHER PROTEIN MIS12 HOMOLOG 1 58 IPR008685 GO:0000278|GO:0000775|GO:0005634
Lsi06g01371 191 PANTHER PROTEIN MIS12 HOMOLOG 107 173 IPR008685 GO:0000278|GO:0000775|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01371 - - - bhj:120071647 241.506
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g395 . . Bda06g00499 . . . . . . . Cma10g00266 Cma11g00241 Car10g00250 Car11g00220 Sed08g0319 . Cpe04g01431 Bhi02g00037 Tan09g1979 Cmetu02g1707 . Hepe09g0306 . . Cla06g01507 Cam06g1662 . Cco06g1719 Clacu06g1628 Cmu06g1577 Cre06g2387 . . Cone13ag0015 Cone19ag0013 . . . . . Blo15g00354 . . . . . . . Cmo10g00284 Cmo11g00244 . . . . . Cpe18g00731 . . . . . . . . . . . . . . Lsi06g01371 Csa01g00313 Chy02g02427 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007143 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01371 Lsi_Chr06 FPKM 290.4617 304.156494 775.762512 794.22998 97.165665 89.568565 100.795464 6496.877441 7134.886719 7548.385742