Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01373 ATGCCGACCGTAAGCGTCGGAAGAGATCTTCTATTTGCTGCCATTGGAAGAACTTATTCGCAGGAAGAGTTTGAAGAGCTGTGCTTTAGTTTTGGAATTGAGCTTGATGACGTTACGACAGAGAAGGCGATCATTAGGAAAGAGAAGCATTTGGAAGAAGAAGCGGATGAAGATGAAGAAGTCATCTACAAGATTGAAGTCCCCGCAAACAGGTACATTTCTTCATACGATTTGCTCTGTCTTGAAGGGCTTGCTCAAGCACTGCGCATTTTTAATAAGCAGGAGGAGACACCCAGATATACATTAGCCAATATCAGCAAAGAATCAATGCATAAAATGCATGTACAACCGGAGACTTCCTTGATCCGTCCTTACATTGTTTGTGCTGTTTTGAGAGACATGACTTTTGATGAAGCAATTTATACTAGTTTCATTGATCTGCAAGAGAAACTTCATCAGAACATATGTCGGTGA 474 41.14 MPTVSVGRDLLFAAIGRTYSQEEFEELCFSFGIELDDVTTEKAIIRKEKHLEEEADEDEEVIYKIEVPANRYISSYDLLCLEGLAQALRIFNKQEETPRYTLANISKESMHKMHVQPETSLIRPYIVCAVLRDMTFDEAIYTSFIDLQEKLHQNICR 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24290281 24291592 - Lsi06G013730.1 Lsi06g01373 666103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01373 157 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 93 IPR040659 -
Lsi06g01373 157 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 1 157 - -
Lsi06g01373 157 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 157 IPR045060 GO:0004826|GO:0006432
Lsi06g01373 157 SUPERFAMILY Putative DNA-binding domain 5 97 IPR009061 -
Lsi06g01373 157 Gene3D - 1 93 - -
Lsi06g01373 157 Gene3D - 103 157 IPR020825 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01373 K01890 FARSB, pheT; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] - csv:101210257 274.248
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g401 . . Bda06g00500 . . . . Bma12g00949 . . Cma10g00267 . Car10g00251 . . . . Bhi02g00039 . . . . . . Cla06g01510 Cam06g1665 Cec06g1726 Cco06g1722 Clacu06g1631 Cmu06g1580 Cre06g2390 . . . Cone19ag0020 . . . . . Blo15g00353 . . . . . . . Cmo10g00286 . . . . . . Cpe18g00729 . . . . . . . . . . . . . . Lsi06g01373 Csa01g00315 Chy02g02425 Cme02g01791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005974 1 2 1 1 0 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 2 2 2 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01373 Lsi_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Lsi06g01373 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0