Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01374 ATGGCTCAAGATACGTCTCCTAGCATTGAATCACCTCGGAGGCGTTCTGGCCTCTTGCGAGATCAAGTTCAGTTAGTTAAGAAAAAGGACTCGAATCGATATGAGATCCTTCCAATTCAAGATCCTCTTTCATTTGAGAAAGGTTTCTTCATTGTTATACGTGCGTGCCAGTTATTGTCTCAAAAGAATGATGGGATAATTCTAGTAGGAGTGGCAGGACCCTCTGGAGCTGGGAAGACTGTATTTACTGAGAAGGTGCTTAACTTTATACCCAGCATTGCTGTTATCACGATGGATAACTACAATGATTCCAGTCGTATCATTGATGGCAACTTTGATGACCCACGCCTAACAGATTATGATACATTGCTGGAAAATATTAATGGTTTGAGAGAAGGAAAACCTGTCCAGGTTCCTATTTACGATTTCAAGACTAGCAGTCGCGTGGGTTACAGGACTCTTGAAGTTCCCGAGTCACGAATAGTCATTATTGAGGGCATCTATGCTTTAAGTGAAAGATTACGTCCATTGCTAGATCTTCGTGTATCAGTGACCGGTGGTGTTCATTTTGACTTAGTGAAACGGGTACTACGTGATATTCAGCGAGCTGGCCAAGAGCCAGAAGAAATAATACATCAAGTTTCTGAAACGGTTTATCCAATGTATAAAGCTTTTATTGAGCCAGATCTTCAGACTGCCCATATAAGAATTATTAACAAATTCAATCCCTTTTCTGGTTTCCAGAATCCTAATTACATTCTTAAGTCAACTAAAGCAGTACCTGTGGATCAAATTAAGGCTGTTATATCTGAAAATCACGAGGAGTCTACTGAGGAAACTTATGACATTTATCTTCTACCTCCTGGTGAAGATCCTGAAGCGTGTCAATCGTATCTGAGGATGAGAAATAGGGATGGCAAATACAATCTAATGTTTGAGGAGTGGGTTACAGATATTCCATTCATAATATCACCTAGAATAACTTTCGAAGTTAGTGTGCGCCTTCTTGGAGGGCTTATGGCGCTTGGATACACAATTGCAACTATTCTTAAAAGAAGCAGCCACATATTCTCTGATGATAGGGTGTGTATAAAGATTGATTGGTTGGAGCAACTTAACCGAAAATACATTCAGGTGCAAGGAAAAGATCGGGTGCATGTTAAATGTGTTGCTGAGCAGTTGGGTTTGGATGGTTCCTATATCCCTCGAACTTATATTGAACAGATACAGCTAGAGAAGCTTGTTAATGATGTTATGGCCTTGCCAGATGATTTAAAAACCAAGCTCAGCATAGACGACGAGTCACTTTCGAGTCCAAAGGAAGCACTTTCCCGAGCTTCTGCAGATAGGAGAAATAAGTACCTTAACCGCGGCTTATCACAATCATTTTCAAATCGGAGGGACAAGACCTTGTCAAAGCTTACAAAGCTTGCTGTTAATAATAGGAGATTTGATGTGAGGGCTCCAGATTCCCCTGCAGTAGTCTCTAACCAGGGAGCTATTACTCAACTTTCAGAACAGATTTCTACTCTCAGTGAGAGAATGGATGAGTTCACAACTCGTATTGAAGAGCTGAACTCCAAGATCTGTACTAGAAAAATTTCTGCTAGCCAGCAGAACTTGGTTTCACAATCTGATGCGTGCAACAACGGCTCCGGAGCAACTTCAATTTTCATATCTGGCTTGAGTAACGGTGCCTTAACCGGATCGCTACTGCCTCATTCTTCGTCATCCTCCCAATTGGCCAAGGAATCTCCCTTGCTGGAAGAGATACAAAACATAGCACGGGCACAGCGTCAAATTATTCTCCAAGTCGACAATTTGAGCAACCTTCTCCGGGAGCACTCGAGCGAGAGGAGTCGCCGGGGAAAAGCTGACGACGAAGGGAGGTGGAGGATTACTGATCTTGAATCCATCAGCACCCCACTTTTGCTAACACTTGCAGTTGGTAGTTTAGGTTTACTTTTGTTCAAGAGCTTGAATTCTCAGAAATAA 1995 42.06 MAQDTSPSIESPRRRSGLLRDQVQLVKKKDSNRYEILPIQDPLSFEKGFFIVIRACQLLSQKNDGIILVGVAGPSGAGKTVFTEKVLNFIPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENINGLREGKPVQVPIYDFKTSSRVGYRTLEVPESRIVIIEGIYALSERLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQVSETVYPMYKAFIEPDLQTAHIRIINKFNPFSGFQNPNYILKSTKAVPVDQIKAVISENHEESTEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDIPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFSDDRVCIKIDWLEQLNRKYIQVQGKDRVHVKCVAEQLGLDGSYIPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDESLSSPKEALSRASADRRNKYLNRGLSQSFSNRRDKTLSKLTKLAVNNRRFDVRAPDSPAVVSNQGAITQLSEQISTLSERMDEFTTRIEELNSKICTRKISASQQNLVSQSDACNNGSGATSIFISGLSNGALTGSLLPHSSSSSQLAKESPLLEEIQNIARAQRQIILQVDNLSNLLREHSSERSRRGKADDEGRWRITDLESISTPLLLTLAVGSLGLLLFKSLNSQK 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24324051 24330447 - Lsi06G013740.1 Lsi06g01374 666104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01374 664 PANTHER URIDINE KINASE 7 652 - -
Lsi06g01374 664 Coils Coil 501 528 - -
Lsi06g01374 664 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Lsi06g01374 664 Gene3D - 67 248 IPR027417 -
Lsi06g01374 664 PRINTS Uridine kinase signature 66 83 - -
Lsi06g01374 664 PRINTS Uridine kinase signature 189 199 - -
Lsi06g01374 664 PRINTS Uridine kinase signature 133 148 - -
Lsi06g01374 664 PRINTS Uridine kinase signature 225 238 - -
Lsi06g01374 664 Gene3D - 257 414 - -
Lsi06g01374 664 SUPERFAMILY CYTH-like phosphatases 262 408 IPR033469 -
Lsi06g01374 664 Pfam Phosphoribulokinase / Uridine kinase family 69 237 IPR006083 GO:0005524|GO:0016301
Lsi06g01374 664 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 7 652 - -
Lsi06g01374 664 CDD UMPK_like 68 240 - -
Lsi06g01374 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 237 IPR027417 -
Lsi06g01374 664 Pfam CYTH domain 270 405 IPR023577 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01374 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101210506 1207.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01374 Lsi-Chr6:24324051 Lsi07g01150 Lsi-Chr7:16976219 9.86E-11 dispersed
Lsi05g00389 Lsi-Chr5:4921656 Lsi06g01374 Lsi-Chr6:24324051 1.02E-09 transposed
Lsi11g00135 Lsi-Chr11:1518212 Lsi06g01374 Lsi-Chr6:24324051 2.41E-36 transposed
Lsi04g00320 Lsi-Chr4:3271353 Lsi06g01374 Lsi-Chr6:24324051 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g403 Blo04g00806 . . . . . . . . . Cma10g00269 Cma11g00239 Car10g00252 Car11g00218 . . Cpe04g01432 Bhi02g00041 Tan09g1983 . . . . . . . . . . . . . . . Cone19ag0022 . . . . . . . Bda14g00899 . Bpe15g00559 Bma03g00874 . . Cmo10g00287 Cmo11g00243 . . . . . Cpe18g00728 . . . . . . . . . . . . . . Lsi06g01374 Csa01g00316 . Cme02g01792
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001604 2 5 3 2 2 1 4 1 1 1 1 1 4 2 2 4 1 3 4 1 2 2 3 2 2 2 2 5 4 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01374 Lsi_Chr06 FPKM 0.0 0.0 0.617079 0.549417 1.314958 1.748629 1.129686 2.530931 4.092707 2.453443
Lsi06g01374 Lsi_Chr00 FPKM 0.0 0.0 0.612783 0.549624 1.086532 1.748629 1.035546 2.515714 4.09271 2.415652