Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01375 ATGGATTTGGAACCCAATCCGTCTCTTCTTGATTTTCACATGCCCGCTGAGTGGGAACCCCACTCCCAATGTTGGATGGGTTGGCCTGAACGGCCTGATAATTGGAGGGACAATGCAATCCATGGACAACGAGTATTTGCTAAGGTGGCATCTGCAATCTCAAAGTTCGAATGTGTGACTGTCTGTGCTAGTGCTTCCCAGTGGGAGAATGCTCGCAGTCAGCTACCAGCAAATATTAGGGTTGTTGAGCTTGGAATGAATGACTGCTGGTTCCGCGATACTGGGTCCACGTTTGTTGTAAGGAAAAAAATGTCAAATTCTGGTACAGCAGTGGAGTCTGTTGCAGGAATCGATTGGAACTTCAATAGTTGGGGAGGTGTTGAGGATGGTTGTTACGCTGATTGGAGTCTTGACCTTCTAGTTGCAAGGAAGATCCTGGATATTGAGAGGCTTCCTAGGTTTTTGAACACAATTGTTCTTGAAGGTGGATCCATCCATGTAGATGGAGAAGGGACTTGTCTTACCACAGAGGAGTGTCTCTTGAATAAAAACAGAAATCCACATCTGTCAAAGGGTCAGATAGAGGATATACTGAAGGCCTATCTTGGGGTGAAGAAGATCATTTGGCTGCCTCGTGGACTATACGGCGATGATGATACAAATGGTCATATCGATAATATATGTTGTTTTGCAAAGCCTGGAGTGGTTCTGTTATCTTGGACTGATGATCAAACAGATCCTCAGTATGAACGGTCCATGGAGGCATATTCTGTTCTCTCAGAAGTTACTGACGCCAAGGGTAGGAAATTGGAAATAATAAAACTCCATGTGCCAGGACCACTTTATTTGACAGATGAAGAGGCTGCAGGAATTGTTCAGGATGGTGATGCTAAGCCAAGACCTCCTGGTCTGAGACTGGCTGCCTCTTATGTAAACTTCTACATTGCTAATGGAGCAATTATTGCACCTCAATTTGGGGATCAGAAGTGGGATGATGAAGCTGTCCGCGTCCTAGCTGGAGCATTTCCAAATCATGAAATAGTTGGAGTTGAAGGTGCTAGAGAGATCGTTTTGGGAGGTGGAAATATACACTGCATTACTCAACAACAACCAGCAATAACCTCTACACCTCCAAAACAAAGGCTGAAATTCGTGGTGAGATCTGTATGCATTCAGATTGAACAAGAGATGGGCTGCACATTCTCTGGATTGAATGCTTTCTACGATGCTGTGAATAGCGGTGGAGATGTGTGGATCAATGAGAACAGATTCAGGATCGTTAGGCAGCTCGGTGAAGGTGGCTTTGCTTATGTCTTCCTCGTCAAGGAGGTGCTCGCTGATTCATCTTCAGACGCTGTTTGCACTGGTTTGCGCAAGAAATTCAAGGACTCCACTCATCTTTCTGATGATGGTACATATGCATTGAAAAAGGTGCTCATTCAGAATAATGAACAACTGGAATTGGTGAAAGAGGAGATTCGTGTTTCATCTCTGTTTAGTCATCCCAATCTACTTCCTCTTCTTGATCATGCTATAATAGCTACTAAGCCTACCCAAGAACGATCTTGGAACCATGAAGCATACCTACTATTTCCAGTACATTTGGATGGAACGTTATTGGACAATGCAAAAACCATGAAAACAAAAAAGGAGTTCTTCTCAACATCAGATGTTTTGCAAATATTTCGACAGCTATGTGCGAGTCTCAAGCACATTCACAGTTTTGATCCCCCATATGCACACAATGACATCAAGCCTGGTAATGTTCTCATAACTCGTAGAAAGGGCCAGCCTCCTCTTGCTATATTGATGGATTTTGGAAGTGCCCGGCCTGCAAGGAGGCAAATTGGCTGTCGCTCAGAAGCAGTGCAGTTACAGGAATGGGCATCTGAACACTGTTCTGCTCCTTTCCGGGCTCCTGAGTTGTGGGATTGTGCAAGCCATGCAGATGTTGACGAAAGAACTGATATTTGGTCCTTAGGATGCACGCTGTATGGGGTATCTCCATTTGAATATGCGCTTGGGGAATCTGGAGGAAGCTTACAGTTAGCAATCGTAAATGTACAGATCAAGTGGCCGGCTGGACCAACTCCTCCATATCCCGATGCTCTACATCAGTTTGTGAAGTGGATGCTTCAGCCACAGGCTGCAGTCCGTCCCCGCATCGATGATATTGTCATTTGTGGTTCATTTGTGGTTCCACCATTCAGGCATCATGGTTACATGATAGCCGCCTATGGAAAGCTGAGGTCCCATATACTGGAATTTGTCTTTAATGGATTGTTGATGTACAGGTCTCTATTGAGGACTTCGGGTGCGTTCTTCAAGGAGAACATATTTGATCAAAAGCTTCATGTATCGAATATTACACATGAAAGAAAGCATCAATTCCTCAGAATTTTCACTGTACTGCAACAAGATCAAGTGGGAATCAAATCAGGGATTAATTCTCCACTTCCCAGCCGCCCCCGTGCCCTTGGAAAGGGAGAGATGACAGTTATATGGAAAGAGTTTTTGCAATGGAACTCTCCCATCCCATATATCTTTGGAGGCATTGCCATTGTTTTCGGAATCACTTCTGCTGTTCTTTTTATCCTGGCTTGCTCTCACCAAATGCAAAATTCTCCCATCAACGAGGACAAAGAGAAAGCAAGCAAGAACAAAGGAAGCGAGCAGTTTGATACTACTCCAAGTATAGCTGTAATCATGGCTGGGGATGATCATCCCAGGTACATGGCAAAGCCTGTCTCTTTTGTTGCGAATTAG 2766 44.43 MDLEPNPSLLDFHMPAEWEPHSQCWMGWPERPDNWRDNAIHGQRVFAKVASAISKFECVTVCASASQWENARSQLPANIRVVELGMNDCWFRDTGSTFVVRKKMSNSGTAVESVAGIDWNFNSWGGVEDGCYADWSLDLLVARKILDIERLPRFLNTIVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLSKGQIEDILKAYLGVKKIIWLPRGLYGDDDTNGHIDNICCFAKPGVVLLSWTDDQTDPQYERSMEAYSVLSEVTDAKGRKLEIIKLHVPGPLYLTDEEAAGIVQDGDAKPRPPGLRLAASYVNFYIANGAIIAPQFGDQKWDDEAVRVLAGAFPNHEIVGVEGAREIVLGGGNIHCITQQQPAITSTPPKQRLKFVVRSVCIQIEQEMGCTFSGLNAFYDAVNSGGDVWINENRFRIVRQLGEGGFAYVFLVKEVLADSSSDAVCTGLRKKFKDSTHLSDDGTYALKKVLIQNNEQLELVKEEIRVSSLFSHPNLLPLLDHAIIATKPTQERSWNHEAYLLFPVHLDGTLLDNAKTMKTKKEFFSTSDVLQIFRQLCASLKHIHSFDPPYAHNDIKPGNVLITRRKGQPPLAILMDFGSARPARRQIGCRSEAVQLQEWASEHCSAPFRAPELWDCASHADVDERTDIWSLGCTLYGVSPFEYALGESGGSLQLAIVNVQIKWPAGPTPPYPDALHQFVKWMLQPQAAVRPRIDDIVICGSFVVPPFRHHGYMIAAYGKLRSHILEFVFNGLLMYRSLLRTSGAFFKENIFDQKLHVSNITHERKHQFLRIFTVLQQDQVGIKSGINSPLPSRPRALGKGEMTVIWKEFLQWNSPIPYIFGGIAIVFGITSAVLFILACSHQMQNSPINEDKEKASKNKGSEQFDTTPSIAVIMAGDDHPRYMAKPVSFVAN 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24336639 24349543 + Lsi06G013750.1 Lsi06g01375 666105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01375 921 Pfam Porphyromonas-type peptidyl-arginine deiminase 13 371 IPR007466 GO:0004668|GO:0009446
Lsi06g01375 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 579 591 IPR008271 GO:0004672|GO:0006468
Lsi06g01375 921 Gene3D - 3 377 - -
Lsi06g01375 921 ProSiteProfiles Protein kinase domain profile. 424 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01375 921 Gene3D Transferase(Phosphotransferase) domain 1 411 729 - -
Lsi06g01375 921 CDD STKc_16 423 727 - -
Lsi06g01375 921 TIGRFAM agmatine_aguA: agmatine deiminase 9 372 IPR017754 GO:0009446|GO:0047632
Lsi06g01375 921 Hamap Agmatine deiminase [aguA]. 5 372 IPR017754 GO:0009446|GO:0047632
Lsi06g01375 921 Pfam Protein kinase domain 465 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01375 921 SUPERFAMILY Pentein 4 372 - -
Lsi06g01375 921 SUPERFAMILY Protein kinase-like (PK-like) 412 727 IPR011009 -
Lsi06g01375 921 PANTHER AGMATINE DEIMINASE 3 374 - -
Lsi06g01375 921 SMART serkin_6 424 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01375 921 PANTHER AGMATINE DEIMINASE-RELATED 3 374 IPR007466 GO:0004668|GO:0009446
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01375 K10536 aguA; agmatine deiminase [EC:3.5.3.12] - csv:101210752 739.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01230 Lsi-Chr3:22884101 Lsi06g01375 Lsi-Chr6:24336639 2.94E-20 dispersed
Lsi06g01375 Lsi-Chr6:24336639 Lsi07g00982 Lsi-Chr7:13251257 1.13E-13 dispersed
Lsi11g00749 Lsi-Chr11:8338924 Lsi06g01375 Lsi-Chr6:24336639 3.78E-09 dispersed
Lsi02g00150 Lsi-Chr2:1255165 Lsi06g01375 Lsi-Chr6:24336639 0 wgd
Lsi06g01375 Lsi-Chr6:24336639 Lsi07g00981 Lsi-Chr7:13054572 9.67E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g405 Blo04g00805 . . . . Bpe13g00330 . . Cmo13g01093 Cmo18g00013 Cma10g00270 Cma11g00237 Car10g00253 Car11g00216 Sed08g0316 Cpe20g00098 Cpe04g01434 Bhi02g00043 Tan09g1986 Cmetu02g0105 . Hepe09g0303 . . . . . . . . . Cone2ag0779 Cone16ag0257 . Cone19ag0024 . . Chy12g01467 Cme12g01910 . . . Bda14g00898 . Bpe15g00560 Bma03g00873 . Sed08g2148 Cmo10g00288 Cmo11g00241 . Cma18g00012 . . . Cpe18g00727 Bhi08g01044 Tan05g2310 Cmetu12g2001 . Hepe07g2431 . . . . . . . . . Lsi06g01375 Csa01g00318 Chy02g02423 Cme02g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010908 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83744 PF04371 PAD_porph 9.30E-124 CL0197 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01375 Lsi_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0