Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01380 AAGCAGAGAGTGGAAAAAAATCGGTTGGCTTTGTCAAGAGAAATGGCGAAGCTGCTTCTCCATCTTCAAGCTCCTCATCTCGTTTCTTCCCTCAATCGCGGAACCCTCTCATTCATACTCTCCAAACCACTTCCACTCCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTACAATGCCGCTTCGCTCTCGCTCTCTCCTCTTCTTCAGCTTCACGCCGTTGCTTCTCTGTTCGCGCATTCGACGACTCTGCATCAGAGACCAAACGCGTTGAAAAAGAAGAAACAGACGCTTCAAACGAGGCTCCGATGAGTAGCGAGGGCGTCAGGACTCGCGATGAGGATTATCCAAGCGGAGAATTTGAGTTCCAGAAGTTTGGCCCGTGGAGGAGCTTTTTGGTGAAGCTTAAGATGCTGGTGGCCTTTCCTTGGGAGCGCGTCCGCAAGGGCAGCGTCTTGACTATGAAATTGCGAGGGCAGATATCTGATCAGCTAAAGAGCCGTTTCTCTTCAGGGCTTTCTCTACCTCAAATCTGCGAGAACTTTGTCAAAGCTGCATATGATCCTCGTATTTCTGGGATCTATTTGCAAATTGAGGCTCTAAATTGTGGGTGGGGTAAAGTTGAAGAAATTCGAAGGCATATCCTGAATTTCAAGAAATCAGGTAATGCTACTCTACTAAGCATCCCAAGTGAATCTCTGCATACAATGCAAATTTTTAGGAGAGCCATCTGCATTGAGCTTATACGGTTCGAATTTCTCGCGGGTAAATTTATTGTTGCCTATATTCCTACATGTCAAGAGAAAGAATACTACCTGGCATGTGCATGTGAGGAGATATATGCCCCTCCAAGTGCTTATGTTTCTTTGTTTGGATTGACTGTTCAAGCTTCATTTCTCAGAGGTATTGAACCACAAGTGGAAAGGATAGGTAAATATAAAAGTGCTGGTGATCAACTAGCACGGAGAAATATATCAGAAGAAAATTGTGAAATGTTGACGACATTGCTTGATAACATCTATGGCAACTGGCTGGATAAAATTTCTTCAATAAAAGGAAAGAAAAAGGATGATGTTGAAAGCTTTATTAATGAAGGTGTGTACCAAATTGAAAGACTAAAAGAAGATGGCTGGATCACCAACATACAGTATGAGGACGAGGTTCTCTCCATGCTAAGTGAAAGACTTGGTCTGCCAAAGGACAAAAAGGTTCCCATGGTTGATTACAGGAAGTACTCTAGAGTTAGGCAATGGACCGTTGGTTTATCAGGAGGTGGAGACCAAATAGCTGTGATTAGAGCTGGAGGAAGCATTACCCGTGTAAAAAGTCCTTTAAGTGTTCCTAGTTCTGGTATTATTGGGGAGCAATTCATCGAGAAGATTCGGAGTGTTAGAGAGTCGAAAAGGTTCAAGGCTGCCATCATCAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCAGACTTCTTGCTGCATCAAAGCCTGTTGTTGCATCCATGGCTGATGTGGCAGCCAGTGGAGGATACTATATGGCAATGGCAGCTGGGACAATTGTTGCAGAAGATCTAACCCTAACTGGTTCTATTGGAGTTGTCACAGATTTATGGCCCAACTTGCAAGAGCAAGGACAAAGAACAAAAACACCATGGCTGCCTAGGTTAGCGGGGGCTTGCCTATCTAGCCTTAGACCTGTTGGGGTTCCATCTAAGTTCTTGATTGCATCTTGGTTAGCAATTAACAGGGGAAGTTTAACTTGGGGAAACTATATGAAAAGATTGGCTTTAACAAGGAAATCATATCGAGGGGAAGATTTGCTGAGCTTCTTGCGGCTGAACAACGACCTTTCAGTGCATCTTCCTATCAATAAAGGTTACCAGTTTCTGATCAGACCGGACGAAGCAGAACTGTTTGCCAAGTCTGCACAAAATGCGTACAGGCAATTTCGGGACAAAGCAGCCTTTTCCAGATCCATGACTGTGGATGAGATGGAGAAAGTTGCTCAAGGAAGGGTTTGGACTGGTAAAGATGCAGCATCCCGTGGTTTAGTGGATGCTATTGGTGGCTTTTCTCGGGCTGTTGCAATAGCAAAACTGAAAGCCAACATTCCTCAAGACAGCCAGGTTAATCTTGTGGAATTATCGAGACCGTCACCAACACTACCGGAGATATTAAGCGGAGTCGGGAGTACAATTATTGGAGTTGATAGGACAATGAAAGATCTGCTGCAAGACCTTGCTTTGGCAGAAGGAGTTCAAGCTCGTATGGAAGGGATTATGCTGCAGAGAATGGAGGGATTTTCTTATGGCAACCCCATACTTAGTTTGATAAAAGATTATTTCAGTTCCCTCTAA 2373 44.08 KQRVEKNRLALSREMAKLLLHLQAPHLVSSLNRGTLSFILSKPLPLLSSSSSSSSSSLQCRFALALSSSSASRRCFSVRAFDDSASETKRVEKEETDASNEAPMSSEGVRTRDEDYPSGEFEFQKFGPWRSFLVKLKMLVAFPWERVRKGSVLTMKLRGQISDQLKSRFSSGLSLPQICENFVKAAYDPRISGIYLQIEALNCGWGKVEEIRRHILNFKKSGNATLLSIPSESLHTMQIFRRAICIELIRFEFLAGKFIVAYIPTCQEKEYYLACACEEIYAPPSAYVSLFGLTVQASFLRGIEPQVERIGKYKSAGDQLARRNISEENCEMLTTLLDNIYGNWLDKISSIKGKKKDDVESFINEGVYQIERLKEDGWITNIQYEDEVLSMLSERLGLPKDKKVPMVDYRKYSRVRQWTVGLSGGGDQIAVIRAGGSITRVKSPLSVPSSGIIGEQFIEKIRSVRESKRFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVVASMADVAASGGYYMAMAAGTIVAEDLTLTGSIGVVTDLWPNLQEQGQRTKTPWLPRLAGACLSSLRPVGVPSKFLIASWLAINRGSLTWGNYMKRLALTRKSYRGEDLLSFLRLNNDLSVHLPINKGYQFLIRPDEAELFAKSAQNAYRQFRDKAAFSRSMTVDEMEKVAQGRVWTGKDAASRGLVDAIGGFSRAVAIAKLKANIPQDSQVNLVELSRPSPTLPEILSGVGSTIIGVDRTMKDLLQDLALAEGVQARMEGIMLQRMEGFSYGNPILSLIKDYFSSL 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24378354 24387817 + Lsi06G013800.1 Lsi06g01380 666110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01380 790 Gene3D - 424 554 - -
Lsi06g01380 790 CDD S49_Sppa_N_C 428 704 IPR002142 GO:0006508|GO:0008233
Lsi06g01380 790 Gene3D - 150 414 - -
Lsi06g01380 790 MobiDBLite consensus disorder prediction 87 112 - -
Lsi06g01380 790 PANTHER PROTEASE 4 637 789 - -
Lsi06g01380 790 PANTHER PROTEASE 4 69 540 - -
Lsi06g01380 790 SUPERFAMILY ClpP/crotonase 139 385 IPR029045 -
Lsi06g01380 790 CDD S49_SppA_67K_type 153 394 - -
Lsi06g01380 790 Pfam Peptidase family S49 638 708 IPR002142 GO:0006508|GO:0008233
Lsi06g01380 790 Pfam Peptidase family S49 497 542 IPR002142 GO:0006508|GO:0008233
Lsi06g01380 790 Pfam Peptidase family S49 255 395 IPR002142 GO:0006508|GO:0008233
Lsi06g01380 790 Gene3D - 639 761 - -
Lsi06g01380 790 SUPERFAMILY ClpP/crotonase 418 695 IPR029045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01380 K04773 sppA; protease IV [EC:3.4.21.-] - csv:101211243 1095.11
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g408 . . . . . . . . . . . Cma11g00235 . Car11g00212 Sed12g2036 . Cpe04g01437 Bhi02g00045 Tan09g1990 Cmetu02g0800 . Hepe09g0301 . . . . . . . . . . Cone16ag0253 . . . . . . . . . . . . . . . . Cmo11g00238 . . . . . . . . . . . . . . . . . . . . Lsi06g01380 Csa01g00322 Chy02g02419 Cme02g01796
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010220 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01380 Lsi_Chr06 FPKM 18.579535 19.745014 22.161034 22.02235 25.345446 26.061909 25.223783 7.314686 6.698183 6.035112
Lsi06g01380 Lsi_Chr00 FPKM 13.292425 14.860346 20.554155 21.683554 24.555229 22.705793 23.988905 5.625468 4.661294 4.560945