Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01383 ATGAAAATCCGGTCGGTGAAGCTCCGAGAAGCCCACAAAGCCGCCAGCAATGGCAAACCTTCCTTCTGCTCCGTCCTCTGGGATCAACAAGCCTACCATATTGTCACTGCTTCCTCTTCCGAATCCGCCATATCCATCCACGATTCTCTTCTTCCTTCCACTACTCCGAAAATCATTCACCATCATCGTGAAGGGGTCACTGCGCTGGCTCTTAGCCCTAATTCTACGTGTCTCGCTTCTGGATCCATGGATCGATCCGTCAAGCTCTACAAGTTTCCCGGTGGAGAATTTGAGACCAATATCACAAGATTTACTCTGCCAATACGCATCCTTGGGTTTAATAAATCCGGAAGCCTCTTGGCAGCTGCTGGAGATGATGACGGTATTAAGCTAATCAACACCGTCGATGGTTCAATTGCGAGAGTTTTGAAAGGACATAAAGGAGCCGTTACTGGGCTGGCGTTTGACCCCAATAGTGAATACTTGGCATCTGTGGATTCAATTGGAACTGTAATTTTATGGGAACTTCAATCTGGAAGTATAATACATAACCTCAAAGGCATAGCTCCACACACAGGTTCGGACCCTTCCCTTATGAATGTTTTAAGCTGGAGCCCTGATGGAGAGACGTTAGCAGTCCCAGGTTTAAGAAATGATGTTGTGATGTATGATAGAGATACTGCTGAAAAACTGTTTTCATTGAGGGGAGATCACACTCAGCCGATTTGTTTCCTGTCATGGTCACCAAATGGAAAATACATGGCTACTTCTTCCTTGGATAGGCAAATTCTGATATGGGATGTTGATCAGAAGCTGGATATTGATAGACAAAAATTTGATGAAAGAATATGTTGCATGGCTTGGAAGCCAATTGGCAATGCCTTGGCTGTTATTGATGTCATGGGTAAGTATGGGGTATGGGAATCGGTTGTTCCATCCTCTATGAAACCTCCAACTGAAGATATCCCGAAATTGCAATCAAGGAATAGCAATGGCTTGCTCTTGTTTGATGAAGAGGATGAGGAGCCTAGTGCACATGGCAATTCGAGTGACCTTGGAGAAGATAGCCATTTTGAATCTGAAATTCCAACTCGAAAAAGGTTGCGTAAACATTCAACAAATGAAGAAATCTTGGATGAGGCCGACAGCGAAGATTTTAGCTTGCTCCCAAAGTTGGACTCCCATAAAAAATCACATCGAGTTAAAAGGGATAAGCCAGATAATATTGATGAGGCAGCTGCAGGCAGTGCAATATATAGTAGATTGAAACAACAAGAAGCATTTCAACCAGGAGCAACTCCCTTGCAGCCAGGAAAGAAGCGCTTTCTGTGTTACAATATGCTTGGAAGTATAACAACTTTCGAACATGATGGGTACTCCCACATAGAGATAGATTTTCATGACACTGGGAGTGGCCCACGAGTTCCTTCAATGAACGACCATTTTGGTTTTACGATGGCTGCACTGGATGAGAATGGTAGTGTCTTTGCAAACCCTTGTAAGGGCGAGAAGATTATGAGCACTCTAATGTATCGCCCGTTTGGTAGCTGGGCAAATAACAGTGAGTGGTCTATGAGATTTGATGGAGAAGAAGTTAAGGTTGTCGCAATTGGTAGCAGATGGGTGGCTGCATTTACTAGCCTTAATTATCTTCGCATCTTCACAGATGGTGGTTTACAGAAACATATTCTTTCCCTTGATGGGCCAGTGGTGACTGCATCTGGCTTCAAGGATGAACTTGCATTTGTGACTCATTCTTCAACCTGTCTCCCCTCAAATGACCAGATGCTAGAGTTCAGAACATTAAACATCTCTAATGGAACACAGCTCTTGAGAGGACGTTTGCCATTAACTCCAGGCTCACATCTCACATGGTTCGGATTTAGTGAAGAAGGAAAATTGAGTTCATTTGATTCCAAGGGCGTACTCAGAGTGTTTACAAGTCAATATGGTGGCAGTTGGGTACCATTATTCAGGTTGATCTACAGACTAAAATTTTCTCTGTATATCCTTTACAATGCCAATAAAGAAAGAAAGTCGGATGAAAACTATTGGGTGGCTGGGTTGAACGCTAACAAGTTGTTCTGTGTGATATGCAAAAATCCTGACTCATACCCACAGGTGACACCTAAACCTGTTCTTACTCTGCTAAACCTTTCGTTTCCTCTTGCTCTCTCTGACCTGGGCTCAGAAGCACTTGAGAATGAGTTTATGATGAATGATATGCATCTCAAACAGATCCATGGCAGAATGGAGGAAATGGCATTACTTGGATTGTATGACACGGAACTGGATGATGAGGCATTCAGTATTGAAGCTGCTCAAGACAGATGCATCTTAAGGCTCATTGCTTCCTGCTGCAACGGTGATAAGCTTGTCAGGGCTACCGAACTTGTAAAACTTTTGTCGCTAGAGAAATCAGTTAAGGGTGCAATTAAGCTAGTTACTGCTTTGAAACTTCCTAACTTGGCCGAACGTTTCAATGCTATACTAGAGGAAAGATTGCTTAATGAAACCAAAGGGACTGTGGAAACCACCCTTTCAAGACAAAACTGCAATGGATCTGTCTTACCTAATGTTGCAACCAGCAATATACTAAATTCTGCAATAAAAGCCAAAACTTCAGAAGTTACTCGCCCTTCCTCACCTAAAGGCCCAATACTCTCTGCACCTTTGTTTACGAAGAAACTCAAGTCTGAAGGAGCGAAGTTCAATTCTGGAAAAACAGAAGATAAGCAAACTTCAGGGGTAAATGAGACAACAAAAATGCAGAACACCAAGGGAACAGAAAATAGTGGTGATACAAATGTAGGAGATGCGAAGAAAGCAGTGTCATTGAGTAAGGTAGAGTCCAACATTGAAACCAACCAACATTTCAAGTCATCTAATAATCAGAAGGTGAAGCCAGGAGCTGTAAATCAAGTTCCATGTAATCGCCCCTCGAATCCGTTCTTGAAGTCATCAATCAAGTAA 2973 42.82 MKIRSVKLREAHKAASNGKPSFCSVLWDQQAYHIVTASSSESAISIHDSLLPSTTPKIIHHHREGVTALALSPNSTCLASGSMDRSVKLYKFPGGEFETNITRFTLPIRILGFNKSGSLLAAAGDDDGIKLINTVDGSIARVLKGHKGAVTGLAFDPNSEYLASVDSIGTVILWELQSGSIIHNLKGIAPHTGSDPSLMNVLSWSPDGETLAVPGLRNDVVMYDRDTAEKLFSLRGDHTQPICFLSWSPNGKYMATSSLDRQILIWDVDQKLDIDRQKFDERICCMAWKPIGNALAVIDVMGKYGVWESVVPSSMKPPTEDIPKLQSRNSNGLLLFDEEDEEPSAHGNSSDLGEDSHFESEIPTRKRLRKHSTNEEILDEADSEDFSLLPKLDSHKKSHRVKRDKPDNIDEAAAGSAIYSRLKQQEAFQPGATPLQPGKKRFLCYNMLGSITTFEHDGYSHIEIDFHDTGSGPRVPSMNDHFGFTMAALDENGSVFANPCKGEKIMSTLMYRPFGSWANNSEWSMRFDGEEVKVVAIGSRWVAAFTSLNYLRIFTDGGLQKHILSLDGPVVTASGFKDELAFVTHSSTCLPSNDQMLEFRTLNISNGTQLLRGRLPLTPGSHLTWFGFSEEGKLSSFDSKGVLRVFTSQYGGSWVPLFRLIYRLKFSLYILYNANKERKSDENYWVAGLNANKLFCVICKNPDSYPQVTPKPVLTLLNLSFPLALSDLGSEALENEFMMNDMHLKQIHGRMEEMALLGLYDTELDDEAFSIEAAQDRCILRLIASCCNGDKLVRATELVKLLSLEKSVKGAIKLVTALKLPNLAERFNAILEERLLNETKGTVETTLSRQNCNGSVLPNVATSNILNSAIKAKTSEVTRPSSPKGPILSAPLFTKKLKSEGAKFNSGKTEDKQTSGVNETTKMQNTKGTENSGDTNVGDAKKAVSLSKVESNIETNQHFKSSNNQKVKPGAVNQVPCNRPSNPFLKSSIK 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24400379 24405624 - Lsi06G013830.1 Lsi06g01383 666113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01383 990 Gene3D - 52 311 IPR015943 GO:0005515
Lsi06g01383 990 Pfam Minichromosome loss protein, Mcl1, middle region 427 723 IPR022100 -
Lsi06g01383 990 Pfam WD domain, G-beta repeat 141 165 IPR001680 GO:0005515
Lsi06g01383 990 Pfam WD domain, G-beta repeat 231 267 IPR001680 GO:0005515
Lsi06g01383 990 Pfam WD domain, G-beta repeat 60 90 IPR001680 GO:0005515
Lsi06g01383 990 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Lsi06g01383 990 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Lsi06g01383 990 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Lsi06g01383 990 SUPERFAMILY WD40 repeat-like 25 307 IPR036322 GO:0005515
Lsi06g01383 990 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
Lsi06g01383 990 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 979 - -
Lsi06g01383 990 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Lsi06g01383 990 MobiDBLite consensus disorder prediction 340 373 - -
Lsi06g01383 990 MobiDBLite consensus disorder prediction 908 938 - -
Lsi06g01383 990 MobiDBLite consensus disorder prediction 901 939 - -
Lsi06g01383 990 SMART WD40_4 94 133 IPR001680 GO:0005515
Lsi06g01383 990 SMART WD40_4 52 91 IPR001680 GO:0005515
Lsi06g01383 990 SMART WD40_4 136 175 IPR001680 GO:0005515
Lsi06g01383 990 SMART WD40_4 178 224 IPR001680 GO:0005515
Lsi06g01383 990 SMART WD40_4 227 267 IPR001680 GO:0005515
Lsi06g01383 990 SMART WD40_4 2 48 IPR001680 GO:0005515
Lsi06g01383 990 CDD WD40 62 297 - -
Lsi06g01383 990 MobiDBLite consensus disorder prediction 955 990 - -
Lsi06g01383 990 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 180 - -
Lsi06g01383 990 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01383 K11274 WDHD1, CTF4; chromosome transmission fidelity protein 4 - csv:101211738 1767.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01959 Lsi-Chr5:26720804 Lsi06g01383 Lsi-Chr6:24400379 6.30E-10 dispersed
Lsi06g01383 Lsi-Chr6:24400379 Lsi01g00842 Lsi-Chr1:6715721 8.59E-10 dispersed
Lsi06g01383 Lsi-Chr6:24400379 Lsi02g02285 Lsi-Chr2:29422484 1.09E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g412 . . Bda06g00505 . . . . Bma12g00953 . . . Cma11g00234 . Car11g00211 Sed08g0309 . Cpe04g01438 Bhi02g00049 Tan09g1996 Cmetu02g0986 . Hepe09g0298 . . Cla06g01517 Cam06g1673 Cec06g1734 Cco06g1730 Clacu06g1639 Cmu06g1587 Cre06g2398 Cone11ag0342 . . . . . . . . Blo15g00350 . . Bpe07g00744 . . . . . Cmo11g00237 . . . . . . . . . . . . . . . . . . . . Lsi06g01383 Csa01g00325 Chy02g02416 Cme02g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010498 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01383 Lsi_Chr06 FPKM 5.286492 7.042802 9.04245 12.298623 13.003796 9.738183 12.307409 2.191596 2.060449 1.581101