Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01384 ATGCGAGTTAAAGAAGAAATCAAACCTAACTTTGTCGTGAAGAGACTGAGAACGTTTCGTCTTGGAGATCTTCAGCAGCCGGAGACTTACTCCAGAAATTTGCTAATTGGCTGCTTTCCATGCCTGCGATACAGATCAAAATTCCGCGAGAATAATTCATCTACCAGTTGTGGACTATCAATTCCAAAATTGGCGATAATTCCGATGGAACTTCCTCAACCACGTCCGTTTGGAGCCGAAGGAAACAAATCAACACACGACTTCCTCTCACTGTACACTCATTCAAGTCCCCAGTTAGATCCAAGATCATCCCCGCAAGGTAGTTATCTTAAAACACACGATTTCCTGCAACCACAAGAGCGTATAGGGAAAGCCAGTACCAAGGAAGAGACAGATGTGGAGAGACCACCGCCACCGGCGCTGCCGCCTTCAGTCGAGCATCTTCTCCCCGGAGGGATCGGGACATATAGTATAAGTCACGTTTCATATTTTGATCAGAGGGTGGTTTTGCCGAAGCCGGAAGGTTCGATTTTCACTGGTGCTCGATCGAGTAGCAGCACCGAGAGAAATGATGAGAACTCCAATAGCAGTTCTTTTGCGGCGGCCGGAAGTGGATTCACTCTTTGGGAAGAATGTGCAGTCAAAAAGGGAAAGACAGGGAAGGAGAATATTGTGGGAGATAGACCCCATGAACCTCGGGCGAGCACGAGCCAATGGACGGCGTCCATGGAGCGGCCGTCGCAATCGTCTTCGAACAACCATCACAACACCTTCAGTTGTCTCTCATCCTCTCAGCCGACAGGAACCAAGAACCCGAGCTTCATGGAGATGCTAAAGTCCGCCAAGAGTACCTCTCAGGACGAAGAACTTGACGACGATGGAGACTTTGTCATCAAGAAAGAGACCTCTACCGCCAATAAAGGAGGATTGAGGATTAAAGTTGATGGAAACAGCTCTGATCAAAAGGCCAACACTCCTAGATCAAAGCACTCTGCAACAGAGCAGCGAAGAAGAAGCAAGATAAACGACAGGCTAGTGTTTCTCCTATTATTCAACTTAAAATTCTTTAGTTTATTTCAGATGCTTAGAGGCCTCATTCCTCATAGTGATCAAAAGAGGGACAAAGCATCTTTCTTATTAGAGGTGGTGGAGTACATTCAATTCTTACAGGAAAAGGTCCAGAAGTACGAAGGTTCATACCAAGAATGGAATCATGAAATGGCAAAACTGGTGCCGTTGAGAAACAATCAACGGAGTGCAGATGTTTATAACGATCAATCACGAGGGACAAATAATGGTTCTGTTCCTGCACTAGTTTTAGCAGCAAAATTCATCGAGAAAAATTCTCCGTTATCTCCAATTGTTCCTGGGAGTTCACATAATGCGGTAGATTCTGACACAAGTTCTGCTTCTACCTTGAAAGCAATTGATCACCATTCTGGAAGAACAAATAATGCAGTACCGTTTCCCATGTCGATGCCGCCAAAACTTTATGCACCTACAAGGGATGGAAGTATAGTGCCTCAACCCCCAAAGCAATTGTCATCTGAAACTGATCACCCCTCATTACGCCCCGAAATCCGGTCATGTGAGGCCAGATGCTACAACAACGATGTTGCTGTTGCAAGTGAAATGCAGAAAGAACAAGATTTGACCATTGAAGGGGGTACAATTAACATCTCTAGTGTATATTCTCAAGGGTTATTAAATACTCTCACCCATGCATTACAGAGTTCTGGTGTGGATCTATCGCAAGCCAGAATCTCTGTGCAAATAGAACTCGGTAAGCGAGCAACTAGGCGAGCCATATCTCCAACATCCATTGTTAAGGTATTCTGA 1839 45.19 MRVKEEIKPNFVVKRLRTFRLGDLQQPETYSRNLLIGCFPCLRYRSKFRENNSSTSCGLSIPKLAIIPMELPQPRPFGAEGNKSTHDFLSLYTHSSPQLDPRSSPQGSYLKTHDFLQPQERIGKASTKEETDVERPPPPALPPSVEHLLPGGIGTYSISHVSYFDQRVVLPKPEGSIFTGARSSSSTERNDENSNSSSFAAAGSGFTLWEECAVKKGKTGKENIVGDRPHEPRASTSQWTASMERPSQSSSNNHHNTFSCLSSSQPTGTKNPSFMEMLKSAKSTSQDEELDDDGDFVIKKETSTANKGGLRIKVDGNSSDQKANTPRSKHSATEQRRRSKINDRLVFLLLFNLKFFSLFQMLRGLIPHSDQKRDKASFLLEVVEYIQFLQEKVQKYEGSYQEWNHEMAKLVPLRNNQRSADVYNDQSRGTNNGSVPALVLAAKFIEKNSPLSPIVPGSSHNAVDSDTSSASTLKAIDHHSGRTNNAVPFPMSMPPKLYAPTRDGSIVPQPPKQLSSETDHPSLRPEIRSCEARCYNNDVAVASEMQKEQDLTIEGGTINISSVYSQGLLNTLTHALQSSGVDLSQARISVQIELGKRATRRAISPTSIVKVF 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24423829 24432006 + Lsi06G013840.1 Lsi06g01384 666114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01384 612 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 324 409 IPR036638 GO:0046983
Lsi06g01384 612 MobiDBLite consensus disorder prediction 178 200 - -
Lsi06g01384 612 MobiDBLite consensus disorder prediction 95 113 - -
Lsi06g01384 612 Pfam Helix-loop-helix DNA-binding domain 358 390 IPR011598 GO:0046983
Lsi06g01384 612 MobiDBLite consensus disorder prediction 233 273 - -
Lsi06g01384 612 Coils Coil 386 406 - -
Lsi06g01384 612 MobiDBLite consensus disorder prediction 95 146 - -
Lsi06g01384 612 PANTHER TRANSCRIPTION FACTOR BIM1 69 611 - -
Lsi06g01384 612 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 69 611 IPR044295 GO:0003700|GO:0006351|GO:0046983
Lsi06g01384 612 CDD bHLH_AtBIM_like 324 414 - -
Lsi06g01384 612 Gene3D - 322 414 IPR036638 GO:0046983
Lsi06g01384 612 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 389 IPR011598 GO:0046983
Lsi06g01384 612 MobiDBLite consensus disorder prediction 308 337 - -
Lsi06g01384 612 MobiDBLite consensus disorder prediction 220 273 - -
Lsi06g01384 612 SMART finulus 331 395 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01384 - - - csv:101211973 976.467
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00145 Lsi06g01384 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01384 Lsi-Chr6:24423829 Lsi08g00918 Lsi-Chr8:17562810 3.79E-54 dispersed
Lsi02g00145 Lsi-Chr2:1185492 Lsi06g01384 Lsi-Chr6:24423829 1.44E-31 wgd
Lsi06g01384 Lsi-Chr6:24423829 Lsi07g00965 Lsi-Chr7:12498258 5.25E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g417 . . Bda06g00506 Bda15g00637 Bpe12g00510 . . Bma12g00955 Cmo13g01097 . Cma10g00277 Cma11g00233 Car10g00259 Car11g00210 Sed08g0307 Cpe20g00094 Cpe04g01439 Bhi02g00050 Tan09g1999 Cmetu02g0900 . Hepe09g0297 . . Cla06g01518 Cam06g1675 Cec06g1736 Cco06g1732 Clacu06g1640 Cmu06g1588 Cre06g2399 . . Cone13ag0021 Cone19ag0030 Lsi02g00145 Csa01g00628 Chy12g01472 Cme12g01914 . Blo15g00347 . . Bpe07g00745 . . . Sed01g2275 Cmo10g00294 Cmo11g00236 Cma13g01054 . Car13g00889 . . Cpe18g00723 Bhi08g01049 Tan05g2320 Cmetu12g0108 . . . . Cla04g01132 Cam04g1185 Cec01g1697 Cco01g1743 Clacu04g1212 Cmu04g1191 Cre01g1490 Lsi06g01384 Csa01g00327 Chy02g02415 Cme02g01800
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004257 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25531 PF00010 HLH 5.70E-05 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01384 Lsi_Chr06 FPKM 10.897759 12.611055 17.264086 18.401661 20.621883 20.306236 17.210268 3.5946 2.989161 3.199162