Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01388 ATGCAAGACATACACTCGATCGCCGGAGGAAGTCGCTTGTTCGGCGGCGGTGGCGGCGGAGACCGTCGTCTACGGCCACATCTTCACCACCATCAAAATCACCAGGCCTTGAAGTGTCCAAGGTGTGATTCTCTCAATACGAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCACTTCTGCAAGAGCTGCCGGCGTTACTGGACGAAAGGTGGCGTCCTCCGTAACGTACCCGTCGGCGGTGGCTGCCGGAAAACCAAACGCTCTTCCTCCTCTAAGTCTAAGTCCAACTCAGACGTAGCGGCGGCGGCGGCGACTCCTCCTCCACCTTCTTCCCTTCGTGAACGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCCAGCTTAACCGCCACAACTACTACGGCGGCAGCGGCAGCGACTGAGGCCGTATCGGCTCCGTCGTCTAATTCGGCGTCGACTTTATTGAACGTACAGGATACGAAATTGTTCTCTGGTCCGACTACAAATACAAACCATAATTTCGAAGGTACGGCGGCGGCGGCGATTTCGGACTGCGGAATTTTCTCGGAAATCGGAAGCTTCACGAGCTTGATCACATCATCTAACGAGACATTGGCGTTTGGATTCGGTAACATGGCGGATGTGACGGCGTTTACGATGAATAATCATCAACCGTTTCAAAATCAAACGGCGAATCAATGGCCGCCGCCGCAGAGAATGATGAACGTTAACGATGAACTGAAGATGCAGGAGATCACAGACGGCGGTGGAGGAGGGTACATGAATCAGACGGCTCAGGTAGATCCATCAGGGCTTCAGAATAACAGATCAAACAACATTGGATTTGGACCGTTGGATTGGCAATCAAACGGTGATCATCAAGTTCTGTTTGATCTCCCCAACGCCGTTGATCAAGCATACTGGAGTCATAATCAATGGAGTGATCAAGACCAGCCTAATCTGTACCTTCCGTAA 987 50.76 MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSDVAAAAATPPPPSSLRERKSTSHSSSESSSLTATTTTAAAAATEAVSAPSSNSASTLLNVQDTKLFSGPTTNTNHNFEGTAAAAISDCGIFSEIGSFTSLITSSNETLAFGFGNMADVTAFTMNNHQPFQNQTANQWPPPQRMMNVNDELKMQEITDGGGGGYMNQTAQVDPSGLQNNRSNNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSHNQWSDQDQPNLYLP 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24484328 24485314 + Lsi06G013880.1 Lsi06g01388 666118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01388 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 316 IPR045174 GO:0003700|GO:0006355
Lsi06g01388 328 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Lsi06g01388 328 MobiDBLite consensus disorder prediction 1 26 - -
Lsi06g01388 328 MobiDBLite consensus disorder prediction 115 155 - -
Lsi06g01388 328 PANTHER DOF ZINC FINGER PROTEIN 4 15 316 - -
Lsi06g01388 328 MobiDBLite consensus disorder prediction 81 155 - -
Lsi06g01388 328 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Lsi06g01388 328 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01388 - - - bhj:120071666 508.449
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00370 Lsi06g01388 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01388 Lsi-Chr6:24484328 Lsi02g00370 Lsi-Chr2:3192804 1.24E-35 dispersed
Lsi02g00143 Lsi-Chr2:1170925 Lsi06g01388 Lsi-Chr6:24484328 3.26E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g423 . Blo16g00241 . Bda15g00634 Bpe12g00514 . Bma06g00234 Bma12g01019 Cmo13g00918 . Cma10g00281 Cma11g00228 Car10g00264 Car11g00205 Sed08g0300 Cpe20g00241 Cpe04g01443 Bhi02g00056 Tan09g2004 Cmetu02g1182 . Hepe09g0293 . . Cla06g01522 Cam06g1679 Cec06g1740 Cco06g1737 Clacu06g1644 Cmu06g1592 Cre06g2403 Cone2ag0789 . Cone13ag0023 Cone19ag0032 Lsi02g00370 Csa01g00849 . Cme12g01696 Blo13g00035 . Bda11g01633 . . Bpe15g00563 Bma03g00870 Bma08g00252 . Cmo10g00299 Cmo11g00231 Cma13g00889 . Car13g00729 Car18g00159 . Cpe18g00719 . . . . . . . . . . . . . . Lsi06g01388 Csa01g00332 Chy02g02411 Cme02g01804
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00805 CCT 16 176 C2C2-Dof Transcription Factor Family AT1G29160 58.3 9.8e-45 176.8
Lsi01g00243 CCT 6 162 C2C2-Dof Transcription Factor Family AT1G29160 50.9 2.8e-39 158.7
Lsi02g00805 CCT 16 174 C2C2-Dof Transcription Factor Family AT2G34140 56.5 6.8e-43 170.6
Lsi03g02101 CCT,ECH 46 178 C2C2-Dof Transcription Factor Family AT2G37590 68.1 6.6e-42 168.3
Lsi04g00882 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 8.0e-40 161.4
Lsi02g01651 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 63.3 3.4e-38 156.0
Lsi02g01364 . 64 138 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.9e-37 152.1
Lsi03g01499 . 135 514 C2C2-Dof Transcription Factor Family AT5G39660 52.5 1.2e-81 300.8
Lsi02g01364 . 65 138 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.3e-38 155.6
Lsi01g01417 CCT,ECH 51 124 C2C2-Dof Transcription Factor Family AT5G02460 87.8 5.9e-37 152.1
Lsi04g00882 . 55 236 C2C2-Dof Transcription Factor Family AT3G55370 50.7 2.1e-41 166.8
Lsi02g01364 . 49 142 C2C2-Dof Transcription Factor Family AT3G55370 76.6 3.4e-39 159.5
Lsi03g02101 CCT,ECH 99 181 C2C2-Dof Transcription Factor Family AT3G55370 79.5 1.2e-36 151.0
Lsi06g01388 CCT 28 328 C2C2-Dof Transcription Factor Family AT5G60850 51.9 9.1e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004522 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25532 PF02701 zf-Dof 4.40E-33 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01388 Lsi_Chr06 FPKM 7.086267 6.48541 1.15549 0.978542 13.014998 14.003096 13.495082 0.061601 0.0 0.088004
Lsi06g01388 Lsi_Chr00 FPKM 6.211657 5.858657 1.547459 1.470483 14.237477 14.80084 15.00191 0.154572 0.0 0.183072