Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01388 ATGCAAGACATACACTCGATCGCCGGAGGAAGTCGCTTGTTCGGCGGCGGTGGCGGCGGAGACCGTCGTCTACGGCCACATCTTCACCACCATCAAAATCACCAGGCCTTGAAGTGTCCAAGGTGTGATTCTCTCAATACGAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCACTTCTGCAAGAGCTGCCGGCGTTACTGGACGAAAGGTGGCGTCCTCCGTAACGTACCCGTCGGCGGTGGCTGCCGGAAAACCAAACGCTCTTCCTCCTCTAAGTCTAAGTCCAACTCAGACGTAGCGGCGGCGGCGGCGACTCCTCCTCCACCTTCTTCCCTTCGTGAACGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCCAGCTTAACCGCCACAACTACTACGGCGGCAGCGGCAGCGACTGAGGCCGTATCGGCTCCGTCGTCTAATTCGGCGTCGACTTTATTGAACGTACAGGATACGAAATTGTTCTCTGGTCCGACTACAAATACAAACCATAATTTCGAAGGTACGGCGGCGGCGGCGATTTCGGACTGCGGAATTTTCTCGGAAATCGGAAGCTTCACGAGCTTGATCACATCATCTAACGAGACATTGGCGTTTGGATTCGGTAACATGGCGGATGTGACGGCGTTTACGATGAATAATCATCAACCGTTTCAAAATCAAACGGCGAATCAATGGCCGCCGCCGCAGAGAATGATGAACGTTAACGATGAACTGAAGATGCAGGAGATCACAGACGGCGGTGGAGGAGGGTACATGAATCAGACGGCTCAGGTAGATCCATCAGGGCTTCAGAATAACAGATCAAACAACATTGGATTTGGACCGTTGGATTGGCAATCAAACGGTGATCATCAAGTTCTGTTTGATCTCCCCAACGCCGTTGATCAAGCATACTGGAGTCATAATCAATGGAGTGATCAAGACCAGCCTAATCTGTACCTTCCGTAA 987 50.76 MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSDVAAAAATPPPPSSLRERKSTSHSSSESSSLTATTTTAAAAATEAVSAPSSNSASTLLNVQDTKLFSGPTTNTNHNFEGTAAAAISDCGIFSEIGSFTSLITSSNETLAFGFGNMADVTAFTMNNHQPFQNQTANQWPPPQRMMNVNDELKMQEITDGGGGGYMNQTAQVDPSGLQNNRSNNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSHNQWSDQDQPNLYLP 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24484328 24485314 + Lsi06G013880.1 Lsi06g01388 666118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01388 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 316 IPR045174 GO:0003700|GO:0006355
Lsi06g01388 328 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Lsi06g01388 328 MobiDBLite consensus disorder prediction 1 26 - -
Lsi06g01388 328 MobiDBLite consensus disorder prediction 115 155 - -
Lsi06g01388 328 PANTHER DOF ZINC FINGER PROTEIN 4 15 316 - -
Lsi06g01388 328 MobiDBLite consensus disorder prediction 81 155 - -
Lsi06g01388 328 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Lsi06g01388 328 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00370 Lsi06g01388 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01388 Lsi-Chr6:24484328 Lsi02g00370 Lsi-Chr2:3192804 1.24E-35 dispersed
Lsi02g00143 Lsi-Chr2:1170925 Lsi06g01388 Lsi-Chr6:24484328 3.26E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25532 PF02701 zf-Dof 4.40E-33 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01388 - - bhj:120071666 508.449