Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01393 ATGAAAGTATGCAACCAGAAAATTTCCAAGTCAAAGAGATTGGTGAAGAGGGGTACTAAATTGAAACCGCAGAGTCAAATTAGTGTGTGTCGCATTGACCATGGCGAATTTCTAGTTCTCATTCCATTTAATAAAAAGGAGTCTTCCAAGTCTCGGCTACGCGATCAATATGAACAAGGGTCCAGTTTTTCGAGCGGAACCTCAATTTCTCAATTCGCCGATTCTGCGTGGTCCGATATGGTGCAGGATTTATCGTATTTACATGGCTGTTCTGTTGAAGGGAGGGAGGAAAATGTCCCTGAACGTGAGAGAACGAGTTCTGGAGTCGGAGGTGTGGATGGTGAACCGATAGCGACATGTAGTACTAGTTCTTTTAGTTCGAAAGCTAAAGGAAAAATGGGTTTTGCTTATGATGACTTTAATGGGAATTTAGATGACGTTTTGAGGAATTTTTCATCGTCTCCTTCTGAGGGGTTTTCAAATGAACGCACCTGTGAAAGCTTTATTAAGTTTTTGGAGTCGGTGAATTGTTTATCGGACCCACGTAATGGGAATTGTATGTTAGCAAAACAGGCTAATTCACGAAGTGGTAACAAAAGAGCTCCAAATAGCACATGTGCTTCTTCATGTCTATGTCCAGTTTGGTTGAAGAAGATAATGAAGGCATTTTCTTTCTTAAATGTTTTTTCAATGTTTCTTCAACAACAAGAGGAAATTATGAGTGTAAGTCGATTGGAGCAAGCAGTGGAGCACCTGCAGAAACGTGGAATTACGCTTTGTATGGAGGACATACAGAATCTCTCTCTTCTATGTCCCAAGGCAGTACATTTTGCAAATGGCAGATCGGAAGATACCTATGTTGATAAGCTTATCATTATTATTTCTTTGACTGAAAAAAATGGTCGATGGAAAGATGACATTGATAATTCTGGTAAGGACACTTCAAAACTCTTGCCTGAGAATATGGTTGAACATCTTGAAAAGGGTGTTGGATCTGAGGGCCAGATAGTGCATGTTGAAGATATTGTGGCTAGGAAAGCTGATTATGTGGAAATTCCAAAGGAACTTTCAAAGAATGTTGTATCAGCACTCAAATGTATTGGAGTAGCAAAATTGTACAGCCATCAGGCACGGTCAATAGAAGCGTCCCTAGCTGGAAAGCATGTTGCTGTTGCCACAATGACGTCAAGTGGAAAATCTCTTTGCTATAACTTGCCAGTTCTTGAAGCAATGTCTCAAAATGTCTCATCATGTGCTCTTTACTTATTTCCAACTAAGGCCTTAGCTCAAGATCAACTCAGAAGCTTGCTTGTCATGATGAAAGGATTTAATCATAACCTTAACATTGGCGTTTATGATGGGGATACATCACAGGCTGACAGGATATTGTTGCGTGATAATGCTAGGCTGCTAATCACAAATCCGGATATGCTACATGTATCAATCCTGCCACACCACAGACAATTTAGTAGAATATTATCAAATCTTCGGTTTATAGTCATTGATGAGGCTCACACTTATAAGGGAGCATTTGGATGCCATACTGCACTAATACTACGGAGACTTCGCCGACTATGCTCTCATGTGTATGGAAGTGATCCTTCTTTTATATTCTGCACAGCAACCTCTGCAAATCCCCGCGAACATTGTATGGAACTTGGAAATCTGTCAAGCTTAGAGCTGATTGAAAACGATGGAAGTCCGTCTGCCAGAAAACTTTTCATCCTCTGGAATCCTATTATGGTGCTCTTTGTAGCCCAATTATGGACATTGCGAGGCTCTTTGCAGAAATGGTTCAGCATGGACTTCGCTGCATTGCTTTTTGTAAAACTCGTAAACTTTGTGAACTCGTTTTATGCTACACGTAGGCGTGAAATTCTTAAGGAGAGAGCACCCCATCTGGTTCAGTCTGTGTGTGCCTATCGTGCTGGATACACTGCTGAGGATAGGAGGAGAATTGAGAGTGACTTTTTTGGGGGAAACCTTTGCGGTGTTGCTGCGACAAATGCCCTTGAATTGGGTATTGATGTAGGCCATATTGATGCAACTCTGCATCTGGGTTTTCCTGGCAGTATTGCCAGCTTGTGGCAACAAGCAGGCAGGGCAGGAAGGAGAGAAAAGACTTCTCTTTCTGTGTATGTTGCATTTGAAGGGCCTCTTGATCAATATTTCATGAAACACCCTGAAAAACTTTTTGGGAGCCCAATTGAGTGCTGCCATATTGATGCTGAAAACCAACAGGTTCTTGAACAGCATTTGTTATGTGCTGTATATGAACACCCAGTATGTGTGGCTTATGATCAGAATTTTTTTGGTCCTGGCTTAAACACTGCCCTAATATCTCTGAAAAATAGAGGAGATTTGATTCCTGAGCCATCATGTGGTTCATCCAAAAGTATATGGAACTATATTGGGCAAGAGAAAATGCCTTCTCGATCAGTTAGTATCCGAGCCATTGAAGCAGAGAGATACAAAGTTGTAGACCAGCGTCGAAATGAAGTTCTCGAAGAGATTGAGGAAAGCAAGGCTTTCTTTCAGGTGACTGCTGCTTTGGTATATGAAGGTGCTGTTTATATGCATCAAGGGCGAACTTATCTTGTCAAAAGCTTGAATTTGTCGACTATGCTTGCTTTCTGTGAAGAAGCTGATCTAAAATATTACACAAAAACACGCGATTACACTGACATTCATGTTATTGGTGGTAATTTGGCCTATCCAAGGAGAGCTCCAAATATTCCGCCCTCAAAGACAACTGCACAAGCAAATGAATGCAGAGTTACCACCACTTGA 2790 41.25 MKVCNQKISKSKRLVKRGTKLKPQSQISVCRIDHGEFLVLIPFNKKESSKSRLRDQYEQGSSFSSGTSISQFADSAWSDMVQDLSYLHGCSVEGREENVPERERTSSGVGGVDGEPIATCSTSSFSSKAKGKMGFAYDDFNGNLDDVLRNFSSSPSEGFSNERTCESFIKFLESVNCLSDPRNGNCMLAKQANSRSGNKRAPNSTCASSCLCPVWLKKIMKAFSFLNVFSMFLQQQEEIMSVSRLEQAVEHLQKRGITLCMEDIQNLSLLCPKAVHFANGRSEDTYVDKLIIIISLTEKNGRWKDDIDNSGKDTSKLLPENMVEHLEKGVGSEGQIVHVEDIVARKADYVEIPKELSKNVVSALKCIGVAKLYSHQARSIEASLAGKHVAVATMTSSGKSLCYNLPVLEAMSQNVSSCALYLFPTKALAQDQLRSLLVMMKGFNHNLNIGVYDGDTSQADRILLRDNARLLITNPDMLHVSILPHHRQFSRILSNLRFIVIDEAHTYKGAFGCHTALILRRLRRLCSHVYGSDPSFIFCTATSANPREHCMELGNLSSLELIENDGSPSARKLFILWNPIMVLFVAQLWTLRGSLQKWFSMDFAALLFVKLVNFVNSFYATRRREILKERAPHLVQSVCAYRAGYTAEDRRRIESDFFGGNLCGVAATNALELGIDVGHIDATLHLGFPGSIASLWQQAGRAGRREKTSLSVYVAFEGPLDQYFMKHPEKLFGSPIECCHIDAENQQVLEQHLLCAVYEHPVCVAYDQNFFGPGLNTALISLKNRGDLIPEPSCGSSKSIWNYIGQEKMPSRSVSIRAIEAERYKVVDQRRNEVLEEIEESKAFFQVTAALVYEGAVYMHQGRTYLVKSLNLSTMLAFCEEADLKYYTKTRDYTDIHVIGGNLAYPRRAPNIPPSKTTAQANECRVTTT 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24492973 24505794 + Lsi06G013930.1 Lsi06g01393 666123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01393 929 MobiDBLite consensus disorder prediction 95 115 - -
Lsi06g01393 929 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 380 561 IPR014001 -
Lsi06g01393 929 PANTHER ATP-DEPENDENT HELICASE HRQ1 8 929 - -
Lsi06g01393 929 SMART ultradead3 368 574 IPR014001 -
Lsi06g01393 929 Gene3D - 344 558 IPR027417 -
Lsi06g01393 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 725 IPR027417 -
Lsi06g01393 929 MobiDBLite consensus disorder prediction 909 929 - -
Lsi06g01393 929 CDD DEXHc_Hrq1-like 372 553 - -
Lsi06g01393 929 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 602 747 IPR001650 -
Lsi06g01393 929 Pfam DEAD/DEAH box helicase 374 544 IPR011545 GO:0003676|GO:0005524
Lsi06g01393 929 Gene3D - 605 761 IPR027417 -
Lsi06g01393 929 Pfam Helicase conserved C-terminal domain 612 705 IPR001650 -
Lsi06g01393 929 MobiDBLite consensus disorder prediction 913 929 - -
Lsi06g01393 929 CDD SF2_C_Hrq 574 715 - -
Lsi06g01393 929 SMART helicmild6 625 706 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01393 - - - bhj:120070581 1107.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01393 Lsi-Chr6:24492973 Lsi02g00248 Lsi-Chr2:2104891 1.53E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g427 . . . . . . . . . . . Cma11g00226 . Car11g00202 Sed08g0297 . Cpe04g01445 Bhi02g00060 Tan09g2007 Cmetu02g0001 . . . . Cla06g01524 Cam06g1681 Cec06g1743 Cco06g1741 Clacu06g1648 Cmu06g1595 Cre06g2406 . . Cone13ag0024 . . . . . . Blo15g00344 . . . . . . . . Cmo11g00229 . . . . . . . . . . . . . . . . . . . . Lsi06g01393 Csa01g00335 Chy02g02407 Cme02g01807
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003378 1 12 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 4 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01393 Lsi_Chr06 FPKM 14.557318 13.012013 12.446115 12.391445 14.358998 14.462972 12.648781 8.724636 6.580686 6.456183