Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01399 CTTTGCTTCTTCTTCCTTTTGTCTGAAAATCAAAATTCTCTCTCACTCTCTTATTTCTTGTTTCTTTTATCATCAACAATGGCGGACACCAAGTCCACTCCCATTTTCACTCCTCTTCTCAAAGATGAGTTCGACATCGTCATCCCCACCATCCGTAACCTCGACTTCCTCGAAATGTGGAGGTCATTTTTCCAGCCATATCACTTGATCATTGTCCAAGACGGCGACCCCTCCAAGACTATCAAAGTTCCTCACGGCTTTGACTATGACCTTTATAATCGTAACGATATCAATCGAATTCTCGGTCCTAAGGCCTCTTGCATTTCCTTTAAGGACTCTGCTTGTAGGTGCTTTGGCTACATGATTTCCAAGAAGAAGTACATCTTCACCATTGATGATGACTGCTTTGTTGCTAAAGACCCATCTGGTAAAGAGATTAATGCACTTGAACAGCACATTAAGAACATCTTGACGCCAGCAACCCCATTTTTCTTCAACACGCTTTATGATCCATATAGAAAAGGTGCTGATTTTGTCCGTGGATATCCGTTCAGTCTCCGGGAAGGTGTCCCCACTGCAGTGTCTCATGGCCTTTGGCTAAACATTCCAGATTATGATGCACCCACCCAACTCGTTAAGCCACTCGAGAGAAACACGAGGTATGTCGACGCAGTTCTGACGATACCGAAGGGCACCTTCTTTCCCATGTGTGGAATGAATCTGGCATTCAACCGTGATCTAATCGGTCCCGCCATGTACTTTGGACTCATGGGAGATGGCCAACCCATCGGCCGCTATGACGATATGTGGGCTGGCTGGTGTATGAAGGTCATTTGTGATCACTTGGGATTTGGAGTGAAGACAGGATTGCCATATATCTGGCACAGCAAAGCAAGTAGCCCATTTACAAACCTCAGGAAGGAATACAAAGGAATCTTTTGGCAAGAACAGATCATACCATTTTTCCAAACTGTTACCCTATCAAAGGATTGCAACACTGTGCAGAAATGCTATATTGAACTCTCCAAGCTGGTGAGGGAAAAACTCAGTTCAGTTGACGAGTATTTCCTCAAGCTTGCCGATGCCATGCTCACTTGGATTGAAGCTTGGGACGAGCTGAATCCATCTGGAGAGGAAGTAGATGAATTATCCAAAGTTGTTTCAAAATATTCAAGTAGGACAGATCCTGACCAGGAAATAAAACCTATGATTCCAGTAAGCTAG 1224 44.2 LCFFFLLSENQNSLSLSYFLFLLSSTMADTKSTPIFTPLLKDEFDIVIPTIRNLDFLEMWRSFFQPYHLIIVQDGDPSKTIKVPHGFDYDLYNRNDINRILGPKASCISFKDSACRCFGYMISKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNILTPATPFFFNTLYDPYRKGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTFFPMCGMNLAFNRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHLGFGVKTGLPYIWHSKASSPFTNLRKEYKGIFWQEQIIPFFQTVTLSKDCNTVQKCYIELSKLVREKLSSVDEYFLKLADAMLTWIEAWDELNPSGEEVDELSKVVSKYSSRTDPDQEIKPMIPVS 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24555640 24562280 - Lsi06G013990.1 Lsi06g01399 666129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01399 407 PANTHER UDP-ARABINOPYRANOSE MUTASE 3 27 381 - -
Lsi06g01399 407 Pfam Reversibly glycosylated polypeptide 40 374 IPR037595 -
Lsi06g01399 407 SUPERFAMILY Nucleotide-diphospho-sugar transferases 46 277 IPR029044 -
Lsi06g01399 407 PIRSF UPTG 35 378 IPR004901 GO:0016866|GO:0071669
Lsi06g01399 407 PANTHER UDP-ARABINOSE MUTASE 27 381 IPR037595 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01399 K13379 RGP, UTM; reversibly glycosylated polypeptide / UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.30] - csv:101221524 704.901
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00136 Lsi06g01399 CCT
Lsi02g00136 Lsi06g01399 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01399 Lsi-Chr6:24555640 Lsi08g00901 Lsi-Chr8:17369057 0 dispersed
Lsi02g00136 Lsi-Chr2:1109788 Lsi06g01399 Lsi-Chr6:24555640 0 wgd
Lsi06g01399 Lsi-Chr6:24555640 Lsi07g00955 Lsi-Chr7:12065114 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g442 Blo04g00799 . . . . . . . Cmo13g01106 . Cma10g00287 . Car10g00269 . Sed12g2021 Cpe20g00087 . Bhi02g00076 Tan09g2021 Cmetu02g2065 . Hepe09g0287 . . Cla06g01529 Cam06g1686 Cec06g1748 Cco06g1746 Clacu06g1653 Cmu06g1600 Cre06g2411 . . . . Lsi02g00136 . Chy12g01482 Cme12g01923 . . . Bda14g00889 . Bpe15g00570 . . Sed08g2133 Cmo10g00305 . Cma13g01061 . Car13g00897 . . Cpe18g00715 Bhi08g01066 Tan05g2341 Cmetu12g1637 Lac10g0180 Hepe07g2447 . . Cla04g01142 Cam04g1195 Cec01g1707 Cco01g1752 Clacu04g1221 Cmu04g1200 Cre01g1499 Lsi06g01399 Csa01g00339 Chy02g02403 Cme02g01811
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000316 4 5 5 5 5 4 7 4 4 4 3 4 7 4 4 6 4 7 7 4 4 4 4 4 4 4 4 7 4 4 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01399 Lsi_Chr06 FPKM 3.946237 4.717721 2.495424 2.75975 2.630303 2.610503 2.692941 3.236259 3.424107 3.642934
Lsi06g01399 Lsi_Chr00 FPKM 3.421805 3.853991 1.949041 2.591224 2.319807 2.289866 2.328384 2.892142 2.99106 3.00906
Lsi06g01399 Lsi_Chr00 FPKM 0.998976 1.887979 0.45671 0.873659 0.911941 0.556346 0.779283 0.822252 0.634859 1.24247
Lsi06g01399 Lsi_Chr00 FPKM 7.701621 6.644575 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0