Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01401 ATGGAAGTTAATACCTACAATAATCCATTAGACAAAATTCTCTTTCAATGGGAATGTTACTCGGCTCGACAGCAAAAGATTGCGCTCTTAGCACTTCTGATCTTTTCAGCTTTCTATTCAACTGGAGCTTACGATCCATTGGATCCAAATGGAAACATAACAATCAAATGGGATGTAGTCTCTTGGACGCCAGATGGATATGTCGCTGTAGTGACAATGAACAATTTTCAGATGTACCGCCATATCAATTCACCAGGATGGACTCTAGGCTGGTCATGGGCCAAGAAAGAAGTAATATGGTCAATGGTGGGAGCTCAGACAACGGAACAAGGAGATTGTTCCAAGTTCAAAGGAAATGTCCCTCACTGTTGCAAGAAAAGCCCAGTAGTTGTTGATTTGCTCCCTGGTGTTCCTTACAATCAACAATTCTCCAATTGCTGCAAGGGTGGAGTATTGGCATCCTGGGGACAGGATCCAGCAGGTTCGGTCTCCGCCTTTCAGGTGAGTGTTGGGCTAGCCGGCACTTCAAACAAAACTGTAAAATTGCCAAAGAACTTCACTCTGCTCGGACCAGGACCAGGATACACATGTGGACCTGCAAAAGTTGTGCCTTCTACAGTCTTCCTTACTCCAGATCGCCGGAGGAAAACTCAAGCACTGATGACATGGAATGTAACCTGCACTTACTCACAATTTCTGGCCTCGAAGAACCCAACTTGCTGCGTATCACTCTCAACTTTCTACAATGATACAATCACTTCTTGCCCAACGTGTGCGTGTGGCTGCCAGAACAAACATAATTGTATAAAGAGTGACTCAAAGCTACTGCACAAGGATGGAATAAACACTCCTAAAAAGGATAATACACCTTTACTACAATGCACCCATCACATGTGTCCTGTTAGAGTACACTGGCACGTAAAGATTAATTACAAGGATTACTGGCGCGTGAAGGTTGCTGTAACTAACTTCAACTATAGGATGAACTATACGCTGTGGACACTGGCAGTGCAGCATCCAAATCTGAACAATGTAACTCAAGTCTTTAGTTTTGACTACAAGCCCCTTGTTCCCTATGAATCCATCAATGATACTGGCATGTTCTATGGCATGAAATTCTACAATGATCTATTAATGGAAGCAGGGCCATTTGGAAATGTACAATCTGAAGTACTCATGAAGAAGGACAAGGATACCTTTACCTTCAAGCAGGGTTGGGCATTTCCTAGAAAAGTATACTTCAATGGTGACGAATGCCAGATGCCACCGCCAGAATCATATCCATTTCTACCCAACTCTGCGCCTGGTGGCTCCGGTGCAGTTACCAAATTAACCACCTCCTTGCTTTTGATACTCTGGTTTTTGTGGTGA 1371 43.69 MEVNTYNNPLDKILFQWECYSARQQKIALLALLIFSAFYSTGAYDPLDPNGNITIKWDVVSWTPDGYVAVVTMNNFQMYRHINSPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKSPVVVDLLPGVPYNQQFSNCCKGGVLASWGQDPAGSVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPTCACGCQNKHNCIKSDSKLLHKDGINTPKKDNTPLLQCTHHMCPVRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDKDTFTFKQGWAFPRKVYFNGDECQMPPPESYPFLPNSAPGGSGAVTKLTTSLLLILWFLW 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24569403 24572592 + Lsi06G014010.1 Lsi06g01401 666131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01401 456 PANTHER COBRA-LIKE PROTEIN 28 454 - -
Lsi06g01401 456 PIRSF COBRA 16 456 IPR006918 GO:0010215|GO:0031225
Lsi06g01401 456 PANTHER PROTEIN COBRA 28 454 IPR006918 GO:0010215|GO:0031225
Lsi06g01401 456 Pfam COBRA-like protein 67 230 IPR006918 GO:0010215|GO:0031225
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00135 Lsi06g01401 CCT
Lsi02g00135 Lsi06g01401 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00621 Lsi-Chr5:7649343 Lsi06g01401 Lsi-Chr6:24569403 3.26E-30 dispersed
Lsi06g01401 Lsi-Chr6:24569403 Lsi07g00952 Lsi-Chr7:11986324 0 dispersed
Lsi06g01401 Lsi-Chr6:24569403 Lsi06g01402 Lsi-Chr6:24572437 0 tandem
Lsi02g00135 Lsi-Chr2:1100186 Lsi06g01401 Lsi-Chr6:24569403 0 wgd
Lsi06g01401 Lsi-Chr6:24569403 Lsi07g00951 Lsi-Chr7:11983015 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01401 - - cmo:103494059 918.687