Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01402 ATGAGGTCTCGGCGCTTCGCTTCCGCCGGATCCGTTGCCGACCTTACCGGCTTAGCCGTCTTGCTCATCTTTCTACTTTCCAGCTTCAGTTTCACTTCAACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACAATCAAGTGGGATGTAATGAGCTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCTGGTTGGACATTAGGGTGGACATGGGCAAAGAAAGAAGTCATTTGGAGCATGATGGGAGGTCAAACAACCGAACAGGGCGACTGTTCAAGATTCAAAGGAAATCCTCCTCATTGCTGCAAGAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACACCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAACTCATGGGCCCAAGACCCAGCCAATGCAGCAAGTTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACTGTCAGACTCCCTAAAAACTTCACACTTAAAGCGCCAGGACCTGGATACACTTGTGGGCCAGCAAAGATTGTGAAGCCAACCAAATTTGTGTCTGGAGATAAAAGAAGAGTAACTCAAGCTTTGATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACTATAGTCAACTGCCCAACCTGCACTTGCGGATGTCAAAACAACACGGCGGGTTCTGGGAGCTGTGTGGATCCAGATTCTCCATATTTAGCTTCAGTAGTATCAGCTCCTGATAAATCAGGCATCAATGCACCCTTGGTTCAGTGTACCAGCCACATGTGCCCCATTCGAGTCCATTGGCACGTGAAGCTGAATTACAAGGATTACTGGAGGGTGAAGATCACAATCACCAATTTCAATTACCGAATGAACTACACACTCTGGAATCTTGTGGTGCAGCATCCCAATTTTGATAATATTACTAAATTATTCAGCTTTAACTACAAGTCGTTGAGCCCATATGGTGACCTAAATGATACTGCGATGTTATGGGGAGTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGCCCTCTTGGTAATGTGCAGTCTGAGCTCCTATTCCAAAAAGACCAGAACACTTTCACTTTTGACAAGGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGATGCCTATCCTTATTTGCCAAATGCTAGTTCCAGACAAGCTATATCTCTACTTGCGACTATCTTAATATCTTTGGCATTACTGTTGAATTTTGCACAATAA 1368 44.15 MRSRRFASAGSVADLTGLAVLLIFLLSSFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGNPPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQVSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPTKFVSGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVDPDSPYLASVVSAPDKSGINAPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPYLPNASSRQAISLLATILISLALLLNFAQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24572437 24575798 - Lsi06G014020.1 Lsi06g01402 666132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01402 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0031225
Lsi06g01402 455 PANTHER PROTEIN COBRA 11 451 IPR006918 GO:0010215|GO:0031225
Lsi06g01402 455 PIRSF COBRA 9 455 IPR006918 GO:0010215|GO:0031225
Lsi06g01402 455 PANTHER COBRA-LIKE PROTEIN 11 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00155 Lsi-Chr5:2275670 Lsi06g01402 Lsi-Chr6:24572437 9.33E-88 dispersed
Lsi05g01571 Lsi-Chr5:23465913 Lsi06g01402 Lsi-Chr6:24572437 9.95E-41 dispersed
Lsi06g01402 Lsi-Chr6:24572437 Lsi07g00951 Lsi-Chr7:11983015 0 dispersed
Lsi06g01401 Lsi-Chr6:24569403 Lsi06g01402 Lsi-Chr6:24572437 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01402 - - csv:101213424 894.804