Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01402 ATGAGGTCTCGGCGCTTCGCTTCCGCCGGATCCGTTGCCGACCTTACCGGCTTAGCCGTCTTGCTCATCTTTCTACTTTCCAGCTTCAGTTTCACTTCAACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACAATCAAGTGGGATGTAATGAGCTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCTGGTTGGACATTAGGGTGGACATGGGCAAAGAAAGAAGTCATTTGGAGCATGATGGGAGGTCAAACAACCGAACAGGGCGACTGTTCAAGATTCAAAGGAAATCCTCCTCATTGCTGCAAGAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACACCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAACTCATGGGCCCAAGACCCAGCCAATGCAGCAAGTTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACTGTCAGACTCCCTAAAAACTTCACACTTAAAGCGCCAGGACCTGGATACACTTGTGGGCCAGCAAAGATTGTGAAGCCAACCAAATTTGTGTCTGGAGATAAAAGAAGAGTAACTCAAGCTTTGATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACTATAGTCAACTGCCCAACCTGCACTTGCGGATGTCAAAACAACACGGCGGGTTCTGGGAGCTGTGTGGATCCAGATTCTCCATATTTAGCTTCAGTAGTATCAGCTCCTGATAAATCAGGCATCAATGCACCCTTGGTTCAGTGTACCAGCCACATGTGCCCCATTCGAGTCCATTGGCACGTGAAGCTGAATTACAAGGATTACTGGAGGGTGAAGATCACAATCACCAATTTCAATTACCGAATGAACTACACACTCTGGAATCTTGTGGTGCAGCATCCCAATTTTGATAATATTACTAAATTATTCAGCTTTAACTACAAGTCGTTGAGCCCATATGGTGACCTAAATGATACTGCGATGTTATGGGGAGTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGCCCTCTTGGTAATGTGCAGTCTGAGCTCCTATTCCAAAAAGACCAGAACACTTTCACTTTTGACAAGGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGATGCCTATCCTTATTTGCCAAATGCTAGTTCCAGACAAGCTATATCTCTACTTGCGACTATCTTAATATCTTTGGCATTACTGTTGAATTTTGCACAATAA 1368 44.15 MRSRRFASAGSVADLTGLAVLLIFLLSSFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGNPPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQVSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPTKFVSGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVDPDSPYLASVVSAPDKSGINAPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPYLPNASSRQAISLLATILISLALLLNFAQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24572437 24575798 - Lsi06G014020.1 Lsi06g01402 666132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01402 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0031225
Lsi06g01402 455 PANTHER PROTEIN COBRA 11 451 IPR006918 GO:0010215|GO:0031225
Lsi06g01402 455 PIRSF COBRA 9 455 IPR006918 GO:0010215|GO:0031225
Lsi06g01402 455 PANTHER COBRA-LIKE PROTEIN 11 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01402 - - - csv:101213424 894.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00155 Lsi-Chr5:2275670 Lsi06g01402 Lsi-Chr6:24572437 9.33E-88 dispersed
Lsi05g01571 Lsi-Chr5:23465913 Lsi06g01402 Lsi-Chr6:24572437 9.95E-41 dispersed
Lsi06g01402 Lsi-Chr6:24572437 Lsi07g00951 Lsi-Chr7:11983015 0 dispersed
Lsi06g01401 Lsi-Chr6:24569403 Lsi06g01402 Lsi-Chr6:24572437 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g01402 . 48 447 COBRA Gene Family AT5G60920 80.8 1.2e-210 729.2
Lsi07g00951 . 44 450 COBRA Gene Family AT5G60920 75.7 5.6e-200 693.7
Lsi06g01401 CCT,ECH 55 452 COBRA Gene Family AT5G60920 69.1 6.4e-180 627.1
Lsi07g00952 . 30 425 COBRA Gene Family AT5G60920 67.7 9.3e-179 623.2
Lsi02g00135 CCT,ECH 16 434 COBRA Gene Family AT5G60920 57.0 1.9e-147 519.2
Lsi05g00155 . 50 257 COBRA Gene Family AT5G60920 52.9 2.6e-64 243.0
Lsi06g01402 . 22 452 COBRA Gene Family AT3G02210 74.3 9.8e-206 713.0
Lsi07g00951 . 14 448 COBRA Gene Family AT3G02210 74.5 3.7e-205 711.1
Lsi06g01401 CCT,ECH 27 452 COBRA Gene Family AT3G02210 66.6 2.7e-179 625.2
Lsi07g00952 . 18 428 COBRA Gene Family AT3G02210 67.2 1.9e-177 619.0
Lsi02g00135 CCT,ECH 4 430 COBRA Gene Family AT3G02210 56.7 1.1e-148 523.5
Lsi05g00155 . 18 257 COBRA Gene Family AT3G02210 52.9 8.3e-72 268.1
Lsi06g01402 . 21 446 COBRA Gene Family AT3G29810 75.0 2.9e-202 701.4
Lsi07g00951 . 29 448 COBRA Gene Family AT3G29810 73.6 2.1e-197 685.3
Lsi07g00952 . 3 431 COBRA Gene Family AT3G29810 63.9 3.0e-175 611.7
Lsi06g01401 CCT,ECH 38 436 COBRA Gene Family AT3G29810 66.9 1.5e-174 609.4
Lsi02g00135 CCT,ECH 4 437 COBRA Gene Family AT3G29810 55.3 1.0e-146 516.9
Lsi05g00155 . 18 257 COBRA Gene Family AT3G29810 53.1 4.3e-73 272.3
Lsi06g01401 CCT,ECH 39 363 COBRA Gene Family AT5G15630 84.0 5.0e-178 620.5
Lsi07g00952 . 8 338 COBRA Gene Family AT5G15630 81.9 4.0e-175 610.9
Lsi06g01402 . 31 361 COBRA Gene Family AT5G15630 73.2 2.6e-150 528.5
Lsi07g00951 . 29 358 COBRA Gene Family AT5G15630 68.8 6.6e-146 513.8
Lsi02g00135 CCT,ECH 2 341 COBRA Gene Family AT5G15630 60.0 1.5e-129 459.5
Lsi06g01402 . 19 224 COBRA Gene Family AT5G60950 56.5 8.4e-64 240.4
Lsi07g00951 . 10 220 COBRA Gene Family AT5G60950 56.8 7.1e-63 237.3
Lsi06g01401 CCT,ECH 30 231 COBRA Gene Family AT5G60950 56.2 1.8e-58 222.6
Lsi07g00952 . 26 206 COBRA Gene Family AT5G60950 56.9 3.1e-58 221.9
Lsi07g00951 . 16 428 COBRA Gene Family AT1G09790 53.1 2.6e-134 475.7
Lsi06g01401 CCT,ECH 32 434 COBRA Gene Family AT1G09790 52.7 2.2e-133 472.6
Lsi06g01402 . 32 432 COBRA Gene Family AT1G09790 53.6 4.1e-132 468.4
Lsi07g00952 . 3 409 COBRA Gene Family AT1G09790 50.5 3.6e-128 455.3
Lsi05g00155 . 23 293 COBRA Gene Family AT1G09790 53.8 3.2e-84 309.3
Lsi05g01571 . 88 697 COBRA Gene Family AT4G16120 66.4 8.0e-257 883.2
Lsi05g00621 CCT 164 758 COBRA Gene Family AT4G16120 54.9 1.6e-204 709.5
Lsi04g01234 CCT 85 705 COBRA Gene Family AT4G16120 51.9 4.3e-202 701.4
Lsi05g01571 . 60 703 COBRA Gene Family AT3G16860 62.7 1.5e-244 842.4
Lsi05g00621 CCT 164 764 COBRA Gene Family AT3G16860 52.9 4.6e-196 681.4
Lsi04g01234 CCT 82 695 COBRA Gene Family AT3G16860 51.3 3.6e-193 671.8
Lsi05g01571 . 64 684 COBRA Gene Family AT5G49270 62.1 7.3e-242 833.6
Lsi05g00621 CCT 164 777 COBRA Gene Family AT5G49270 52.3 1.2e-199 693.3
Lsi04g01234 CCT 78 685 COBRA Gene Family AT5G49270 50.9 1.4e-192 669.8
Lsi04g01234 CCT 55 705 COBRA Gene Family AT3G20580 61.8 2.1e-252 868.6
Lsi05g00621 CCT 160 776 COBRA Gene Family AT3G20580 63.2 2.8e-249 858.2
Lsi05g01571 . 81 699 COBRA Gene Family AT3G20580 53.5 4.1e-208 721.5
Lsi05g00621 CCT 164 780 COBRA Gene Family AT4G27110 63.4 3.9e-243 837.8
Lsi04g01234 CCT 65 677 COBRA Gene Family AT4G27110 60.7 1.6e-228 789.3
Lsi05g01571 . 78 699 COBRA Gene Family AT4G27110 52.2 2.2e-201 699.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001464 2 2 2 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 3 2 2 3 2 2 3 2 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01402 Lsi_Chr06 FPKM 0.460099 0.701352 1.073516 0.807501 5.85937 6.100056 6.406638 1.508973 1.506418 1.772417
Lsi06g01402 Lsi_Chr00 FPKM 0.542548 0.779803 1.230829 1.019906 6.925166 7.271653 7.467302 1.700279 1.813291 2.160189