Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01403 ATGCCGCCATTGCCGTGTCTGCAACTTCGAAGCCTTTTTCTTCGATCTCTATCATCATCTTCTTCGAATTCCTTGAACGATTCTGCGAGGACCGTTCTCTTACATCGAAATTTGACGTCTCTCTTCCACCATTTCCGGCATCATGGGGCGGCATTGAGGTTTTCTTCTCCCTTGCGACTCTCACTCTCTCATTCGCTTTCTTCCGAGTCCGGTGAGAATGACGTGGATCTGACATCGCAGTCACTTGCATCCGAGCTTCTCAAAGACCCTGATTTGGATCCTCTTCCCATTACGCAGCGCCTTCAACTTAGCTTTTCACATGTTAAACCGAATCCGGAGTTAGTTCTCAATACGCTCAATCTCTCATCGGAAGCTGGCCGGACGGTGTTAGGGTTTAATGAGTGGTTAGTATCGAAACCTGATTTTCATCACACGGATGAAACTATCTCGTATTTTGTCGATTATTTTGGTCGTAGAAAGGATTTCAATGCTGTTCATGAAGTTCTTGCGAAAGGTATAGGGATCAGTGGGGCTAAAACCCTACGGTCGTCTATTGATCGGTTCGCTCGTGCTGGGCGATCCACAAAGTTGATCTCATTTTTTGAGACGATGGAGAAGAATTACGGGCTTAAGAGGGATAAAGAGTCGCTTAGAATGGTGGTGGAGAAGCTTTGTGAAAATGGCTTCGCGAGCCATGCAGAAAAGATGGTCAAAGACTTGGCGAATGAATTTTTCCCTGATGAAGCGATATGCGATACTCTGATCAAAGGATGGTGCGTTGATGAGAAACTTGATGAAGCAAAAAGGCTGGCGGGTGAGATGTACAGGGGCGGGTTTGAGTTAGGGACAACGGCATATAATGCTTTGCTCGACTGTGTTTGCAAACTTTGTAGGAAAAAGGATCCGTTTAGACTTCATTCTGAAGCTGAGGAAATTCTAGTCGAACTGGATTATCGTGGGGTTCCACGAAATGTGGAAACTTTCAATGTGCTGATCAATAATTTGTGCAAGATTAGAAAAACGTCTGATGCAGTAAATTTGTTTCATCGAATGGGGGAGTGGGGATGTCATCCTAATGCTGAAACGTTCCTTATTTTGATTAGAAGTTTGTATCAAGCTGCAAGAACAGGAGAGGGGGATGAAATGATTGACAGGATGAGGTCTGCAGGCTATGGTGATGCACTTGATAAGAAAGCTTATTATGAATTTCTGAAGATTTTGTGTGGGATTGAGAGAATTGATCATGCTCTGATGGTTTTTGCAAAGATGAAGAAGGACGGTTGTGAACCTGGGATTAAGACATATGATCTATTGATGGGAAAGTTTTGCGCCCATAATCGTCTGGACAAAGCAAATTCACTCTTTAATGAAGCTCAGAAACGGGGAGTGCCAGTTACTCCAAAAGCATATCAGGTGGATCCAAGATATGTAAAGAAGCCAAAGGTAACGAAGGTTGAGAAGAAGAGGGAGACATTGCCTGAGAAAATGGCAAGGAAAAGGCGACGACTGAAGCAAATTCGATTGAGTTTTGTCAAGAAACCGAAAAAAGCAATGCGTAGAGCATTTTGA 1569 43.72 MPPLPCLQLRSLFLRSLSSSSSNSLNDSARTVLLHRNLTSLFHHFRHHGAALRFSSPLRLSLSHSLSSESGENDVDLTSQSLASELLKDPDLDPLPITQRLQLSFSHVKPNPELVLNTLNLSSEAGRTVLGFNEWLVSKPDFHHTDETISYFVDYFGRRKDFNAVHEVLAKGIGISGAKTLRSSIDRFARAGRSTKLISFFETMEKNYGLKRDKESLRMVVEKLCENGFASHAEKMVKDLANEFFPDEAICDTLIKGWCVDEKLDEAKRLAGEMYRGGFELGTTAYNALLDCVCKLCRKKDPFRLHSEAEEILVELDYRGVPRNVETFNVLINNLCKIRKTSDAVNLFHRMGEWGCHPNAETFLILIRSLYQAARTGEGDEMIDRMRSAGYGDALDKKAYYEFLKILCGIERIDHALMVFAKMKKDGCEPGIKTYDLLMGKFCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPRYVKKPKVTKVEKKRETLPEKMARKRRRLKQIRLSFVKKPKKAMRRAF 522
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 24580561 24582129 - Lsi06G014030.1 Lsi06g01403 666133
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01403 522 Pfam PPR repeat family 324 370 IPR002885 -
Lsi06g01403 522 Gene3D Tetratricopeptide repeat domain 145 301 IPR011990 GO:0005515
Lsi06g01403 522 Gene3D Tetratricopeptide repeat domain 302 390 IPR011990 GO:0005515
Lsi06g01403 522 Pfam PPR repeat 253 278 IPR002885 -
Lsi06g01403 522 Gene3D Tetratricopeptide repeat domain 391 516 IPR011990 GO:0005515
Lsi06g01403 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Lsi06g01403 522 PANTHER ATPASE EXPRESSION PROTEIN 3 40 521 - -
Lsi06g01403 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Lsi06g01403 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Lsi06g01403 522 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIAL 40 521 - -
Lsi06g01403 522 Pfam Pentatricopeptide repeat domain 414 442 IPR002885 -
Lsi06g01403 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Lsi06g01403 522 TIGRFAM PPR: pentatricopeptide repeat domain 403 431 IPR002885 -
Lsi06g01403 522 TIGRFAM PPR: pentatricopeptide repeat domain 434 465 IPR002885 -
Lsi06g01403 522 TIGRFAM PPR: pentatricopeptide repeat domain 327 360 IPR002885 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Lsi02g00346 Lsi06g01403 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01403 Lsi-Chr6:24580561 Lsi06g01450 Lsi-Chr6:25057733 2.45E-42 dispersed
Lsi06g01403 Lsi-Chr6:24580561 Lsi02g00346 Lsi-Chr2:2942389 6.40E-29 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01403 - - csv:101213658 906.36