Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01403 | ATGCCGCCATTGCCGTGTCTGCAACTTCGAAGCCTTTTTCTTCGATCTCTATCATCATCTTCTTCGAATTCCTTGAACGATTCTGCGAGGACCGTTCTCTTACATCGAAATTTGACGTCTCTCTTCCACCATTTCCGGCATCATGGGGCGGCATTGAGGTTTTCTTCTCCCTTGCGACTCTCACTCTCTCATTCGCTTTCTTCCGAGTCCGGTGAGAATGACGTGGATCTGACATCGCAGTCACTTGCATCCGAGCTTCTCAAAGACCCTGATTTGGATCCTCTTCCCATTACGCAGCGCCTTCAACTTAGCTTTTCACATGTTAAACCGAATCCGGAGTTAGTTCTCAATACGCTCAATCTCTCATCGGAAGCTGGCCGGACGGTGTTAGGGTTTAATGAGTGGTTAGTATCGAAACCTGATTTTCATCACACGGATGAAACTATCTCGTATTTTGTCGATTATTTTGGTCGTAGAAAGGATTTCAATGCTGTTCATGAAGTTCTTGCGAAAGGTATAGGGATCAGTGGGGCTAAAACCCTACGGTCGTCTATTGATCGGTTCGCTCGTGCTGGGCGATCCACAAAGTTGATCTCATTTTTTGAGACGATGGAGAAGAATTACGGGCTTAAGAGGGATAAAGAGTCGCTTAGAATGGTGGTGGAGAAGCTTTGTGAAAATGGCTTCGCGAGCCATGCAGAAAAGATGGTCAAAGACTTGGCGAATGAATTTTTCCCTGATGAAGCGATATGCGATACTCTGATCAAAGGATGGTGCGTTGATGAGAAACTTGATGAAGCAAAAAGGCTGGCGGGTGAGATGTACAGGGGCGGGTTTGAGTTAGGGACAACGGCATATAATGCTTTGCTCGACTGTGTTTGCAAACTTTGTAGGAAAAAGGATCCGTTTAGACTTCATTCTGAAGCTGAGGAAATTCTAGTCGAACTGGATTATCGTGGGGTTCCACGAAATGTGGAAACTTTCAATGTGCTGATCAATAATTTGTGCAAGATTAGAAAAACGTCTGATGCAGTAAATTTGTTTCATCGAATGGGGGAGTGGGGATGTCATCCTAATGCTGAAACGTTCCTTATTTTGATTAGAAGTTTGTATCAAGCTGCAAGAACAGGAGAGGGGGATGAAATGATTGACAGGATGAGGTCTGCAGGCTATGGTGATGCACTTGATAAGAAAGCTTATTATGAATTTCTGAAGATTTTGTGTGGGATTGAGAGAATTGATCATGCTCTGATGGTTTTTGCAAAGATGAAGAAGGACGGTTGTGAACCTGGGATTAAGACATATGATCTATTGATGGGAAAGTTTTGCGCCCATAATCGTCTGGACAAAGCAAATTCACTCTTTAATGAAGCTCAGAAACGGGGAGTGCCAGTTACTCCAAAAGCATATCAGGTGGATCCAAGATATGTAAAGAAGCCAAAGGTAACGAAGGTTGAGAAGAAGAGGGAGACATTGCCTGAGAAAATGGCAAGGAAAAGGCGACGACTGAAGCAAATTCGATTGAGTTTTGTCAAGAAACCGAAAAAAGCAATGCGTAGAGCATTTTGA | 1569 | 43.72 | MPPLPCLQLRSLFLRSLSSSSSNSLNDSARTVLLHRNLTSLFHHFRHHGAALRFSSPLRLSLSHSLSSESGENDVDLTSQSLASELLKDPDLDPLPITQRLQLSFSHVKPNPELVLNTLNLSSEAGRTVLGFNEWLVSKPDFHHTDETISYFVDYFGRRKDFNAVHEVLAKGIGISGAKTLRSSIDRFARAGRSTKLISFFETMEKNYGLKRDKESLRMVVEKLCENGFASHAEKMVKDLANEFFPDEAICDTLIKGWCVDEKLDEAKRLAGEMYRGGFELGTTAYNALLDCVCKLCRKKDPFRLHSEAEEILVELDYRGVPRNVETFNVLINNLCKIRKTSDAVNLFHRMGEWGCHPNAETFLILIRSLYQAARTGEGDEMIDRMRSAGYGDALDKKAYYEFLKILCGIERIDHALMVFAKMKKDGCEPGIKTYDLLMGKFCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPRYVKKPKVTKVEKKRETLPEKMARKRRRLKQIRLSFVKKPKKAMRRAF | 522 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 24580561 | 24582129 | - | Lsi06G014030.1 | Lsi06g01403 | 666133 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01403 | 522 | Pfam | PPR repeat family | 324 | 370 | IPR002885 | - | |
Lsi06g01403 | 522 | Gene3D | Tetratricopeptide repeat domain | 145 | 301 | IPR011990 | GO:0005515 | |
Lsi06g01403 | 522 | Gene3D | Tetratricopeptide repeat domain | 302 | 390 | IPR011990 | GO:0005515 | |
Lsi06g01403 | 522 | Pfam | PPR repeat | 253 | 278 | IPR002885 | - | |
Lsi06g01403 | 522 | Gene3D | Tetratricopeptide repeat domain | 391 | 516 | IPR011990 | GO:0005515 | |
Lsi06g01403 | 522 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 396 | 430 | IPR002885 | - | |
Lsi06g01403 | 522 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 40 | 521 | - | - | |
Lsi06g01403 | 522 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 324 | 358 | IPR002885 | - | |
Lsi06g01403 | 522 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 431 | 465 | IPR002885 | - | |
Lsi06g01403 | 522 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIAL | 40 | 521 | - | - | |
Lsi06g01403 | 522 | Pfam | Pentatricopeptide repeat domain | 414 | 442 | IPR002885 | - | |
Lsi06g01403 | 522 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 247 | 281 | IPR002885 | - | |
Lsi06g01403 | 522 | TIGRFAM | PPR: pentatricopeptide repeat domain | 403 | 431 | IPR002885 | - | |
Lsi06g01403 | 522 | TIGRFAM | PPR: pentatricopeptide repeat domain | 434 | 465 | IPR002885 | - | |
Lsi06g01403 | 522 | TIGRFAM | PPR: pentatricopeptide repeat domain | 327 | 360 | IPR002885 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi02g00346 | Lsi06g01403 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g01403 | Lsi-Chr6:24580561 | Lsi06g01450 | Lsi-Chr6:25057733 | 2.45E-42 | dispersed | |
Lsi06g01403 | Lsi-Chr6:24580561 | Lsi02g00346 | Lsi-Chr2:2942389 | 6.40E-29 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01403 | - | - | csv:101213658 | 906.36 |