Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01405 ATGAGGTGGGAAAGGGTCCAGCTACTTTCAAGACAGGGCCAAGATGGAGCTCTGGGAGAGATAGCAGGGCCCGGTAAAAGATGGGGCCATACTTGTAACGCCATTAAAGATGGAAGATATCTCTATGTTTTTGGGGGCTATGGTAAAGACAACTGCCAGACTAACCAAGTGCACGTCTTCGACACTGGTAGGAGCCTTCTGCTTTTGCAACCTTTTCTTTTTGTTTCTCTTACATTTGAAGAAGTGGGAAAATTTTGGCCTGGTTTGAGATTTTTGTATACCCTTTTGAGTACTCTTTGTTTTGTAGGTGTCTTGTTCTTAATCAATTGGTGGTTTGCAGCGAAACAAACATGGAGCCAGCCCGTGATAAAAGGAAGTCCACCCACTCCAAGGGACAGTCACACCTGTACTACCATTGGTGACAATCTTTTTGTGTTTGGGGGTACTGATGGGATGAGTCCTCTTAAGGATTTATATATACTGGACACCTCTTTGCATACATGGATTTGTCCAAGTTTAAGAGGCGAGGGGCCAGAGGCACGAGAAGGTCATAGCGCGACGCTTGTTGGCAAACGACTTTTCATCTTTGGTGGTTGTGGCAAATCTGCCAGCAATAATGATGAAGTGTACTATAATGATCTCTACATATTGAATACAGGTAATACCAAGACATTTGTTTGGAAACAAGCTACAACATCTGGTACTCCCCCATCTCCACGCGATAGCCATACTTGCTCATCCTGGAAGAATAAAGTTATAGTCATTGGTGGCGAAGATGCGCATGACTATTATTTGTCAGATGTTCACATCCTTGACACAGATACTCTCGTGTGGACAGAGTTGAACACTTCAGGTCAATTATTGCCACCCCGTGCTGGTCATACAACCATAGCTTTTGGAAAGAGCTTGTTTGTTTTCGGGGGATTTACCGATGCCCAAAATCTATACAATGACCTTCATATGCTTGATATTGTGGCTGGGGACTGTTTAGATCCCTACAAAGTTGGCACACTTGCTCTTTTAGGCGGTTGCAATAAGGGTCTTGAGGCTCTCGACGATATGTATTACTTGTTCACAGGACTTGCAAAGGAGAATGAGAGGAAACTGGAGAAGTTGTCTTTGAGAAAGCAATTGAAGCTGAAGTGTCAAGAACAGAACCTAAATGCCATTCACGGAAGAGCTATGGTACAAATTGGAATCAGTGCTGATGTGTTCCAACCAATCACTGTGCAAGGCTATGGGGCTCCATACAAACAAAATTTTCCTTTGAATCAATCTCAGCATCTTCAAGGAAAGAAGAGTTTTCAAGCCAAGGTTACAGAAAGCATACCTAATGGATACACAATTGAAACTGTCATTGATGGGAAACCTTTGCGGGGAATTTTGTTTTCCAACAGACCAATCCCTACTCACTTTGCTCATCATAGTACTGTTAGGAAGAGGACTTTCGGAGATATTGGCACAATATCGAATGGTGATGTCAACATCAAGTCGAAGACTTCTCGACTGACCAAGCAAGATGAAGTAGATAGTAGACAAGAGGATGGTAGCAATATAAAGGCACCTACTATGCATGAACCAGAAATGGTTGTCACTTCAACGACGCTGATAAAAGATCCAATATCTTCGGATGCTTCGCTACCATCTAAGGTGAGTTCAAGTCCGGAATTGCCTCCTTTGGCTTCAAGTCTAAAGGATATTTCGATTCATGTTCCAATGGATATCGATGTTGAAATTTCCGGAGATATGAAGACAAATGATGCCTTGGATTCCACGGTAGACATTCATAAAGAAAGTATTCCGGCCCCAGCTTCAAACAAGGAAACTATTGCCTTTTTCCCCGACCAAGATGACAGAAGACCTGCTACGATCGGGGAGGCGATTCAAGTTTCAAAATAG 1899 42.97 MRWERVQLLSRQGQDGALGEIAGPGKRWGHTCNAIKDGRYLYVFGGYGKDNCQTNQVHVFDTGRSLLLLQPFLFVSLTFEEVGKFWPGLRFLYTLLSTLCFVGVLFLINWWFAAKQTWSQPVIKGSPPTPRDSHTCTTIGDNLFVFGGTDGMSPLKDLYILDTSLHTWICPSLRGEGPEAREGHSATLVGKRLFIFGGCGKSASNNDEVYYNDLYILNTGNTKTFVWKQATTSGTPPSPRDSHTCSSWKNKVIVIGGEDAHDYYLSDVHILDTDTLVWTELNTSGQLLPPRAGHTTIAFGKSLFVFGGFTDAQNLYNDLHMLDIVAGDCLDPYKVGTLALLGGCNKGLEALDDMYYLFTGLAKENERKLEKLSLRKQLKLKCQEQNLNAIHGRAMVQIGISADVFQPITVQGYGAPYKQNFPLNQSQHLQGKKSFQAKVTESIPNGYTIETVIDGKPLRGILFSNRPIPTHFAHHSTVRKRTFGDIGTISNGDVNIKSKTSRLTKQDEVDSRQEDGSNIKAPTMHEPEMVVTSTTLIKDPISSDASLPSKVSSSPELPPLASSLKDISIHVPMDIDVEISGDMKTNDALDSTVDIHKESIPAPASNKETIAFFPDQDDRRPATIGEAIQVSK 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24599406 24607999 + Lsi06G014050.1 Lsi06g01405 666135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01405 632 PANTHER KELCH REPEAT DOMAIN 1 65 - -
Lsi06g01405 632 PANTHER KELCH REPEAT DOMAIN 331 516 - -
Lsi06g01405 632 PANTHER KELCH REPEAT DOMAIN 113 327 - -
Lsi06g01405 632 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 65 - -
Lsi06g01405 632 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 331 516 - -
Lsi06g01405 632 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 113 327 - -
Lsi06g01405 632 SUPERFAMILY Kelch motif 111 361 IPR015915 GO:0005515
Lsi06g01405 632 MobiDBLite consensus disorder prediction 497 520 - -
Lsi06g01405 632 Pfam Kelch motif 239 284 IPR011498 GO:0005515
Lsi06g01405 632 Pfam Galactose oxidase, central domain 130 168 - -
Lsi06g01405 632 Pfam Galactose oxidase, central domain 290 325 - -
Lsi06g01405 632 Pfam Galactose oxidase, central domain 27 62 - -
Lsi06g01405 632 Gene3D - 2 84 IPR015915 GO:0005515
Lsi06g01405 632 Gene3D - 105 206 IPR015915 GO:0005515
Lsi06g01405 632 Gene3D - 207 403 IPR015915 GO:0005515
Lsi06g01405 632 MobiDBLite consensus disorder prediction 500 520 - -
Lsi06g01405 632 Pfam Kelch motif 178 219 - -
Lsi06g01405 632 SUPERFAMILY Kelch motif 24 63 IPR015915 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01405 - - - bhj:120072293 1047.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01405 Lsi-Chr6:24599406 Lsi11g00641 Lsi-Chr11:6756003 6.86E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g454 . . Bda06g00518 Bda15g00628 Bpe12g00520 . . Bma12g00961 . . Cma10g00291 Cma11g00216 Car10g00273 Car11g00195 . . Cpe04g01452 Bhi02g00084 Tan09g2026 . . . . . Cla06g01533 Cam06g1691 Cec06g1754 Cco06g1752 Clacu06g1658 Cmu06g1605 Cre06g2417 . . . Cone19ag0039 . . . . . Blo15g00342 . . Bpe07g00752 . . Bma08g00247 . Cmo10g00310 Cmo11g00218 . . . . . Cpe18g00712 . . . . . . . . . . . . . . Lsi06g01405 Csa01g00306 Chy02g02432 Cme02g01819
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008147 2 4 2 2 2 0 2 0 0 1 0 0 2 1 1 2 0 1 1 0 1 1 1 1 1 1 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01405 Lsi_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.256252 0.105552 0.0