Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01407 ATGTTGAGAAATAATTCAAAAGAAAAGGGTTGTGAAGCAAAAGAAGAAGGAATTATTAGAAGTAGTAATAATAGTGATGGAAAATATAGTTTCCCCAAGGCTCCAACAAGTTCAAGACAATGGTCAGGATTTAGAAATCCAAGAATTGTTAGAGTTTCTCGTTCATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGTACAATTAGAGGTTTGAGAGATAGAAGGATTAGACTTTCAGTTCCAACTGCAATTCAACTCTATGATCTTCAAGACAAGCTCAAACTTGGCCAACCTAGTAAGGTCATTGATTGGCTTCTTGACGTCACCAAACTCGACATCGACAACCTCCCTCCGCTCCAAATCCCCGCCGGTTTCTCTCCCTTCCACCAACAAATGCTCTTCCCTCAATACGATCCTCATCATTATTACACTTCTTCTTCTTCTTCTTCTTCCTCTTCCCGATTTTGTAATTCGTTCCCTCCTCCTCCTCCCTTTGCGCTCGACGTAAAGGGTAGTGATGCGTATCAGACGACGACAACGGTTGAAAAAACAAAGCTTTGGGATGTGGATTTAACATTACAGGAAAAAGCAGCATCAGCGACGGCGGCAACGACGGCGGCAAAAGGGAAGTGGATTGATGGAAGTAATAATAATAGTGAAGTAGAAGATTACAATGAGCAAATTTCATCTGAAAAGCTCTTATCAATGGCTATTTGTTCTTCAAATTTACCCAACATGGTAAACAATTCCACTCCTTACAATAACTACAACTCTTCTCATGATCATCATCAACCTTCTTATTTATCTCTTTCACAATTTGGGAACAACAACAACAACAATAATAATAATGGGATTTTCCCATCACAATTAGTTGAGGCTGCTCAAACAAGTACTTCATCATCTTCTAATTCTTCACTATTTTTCACTCCTTATGCTTCATATATTACCAATCCATTTGAAAGCCATATCCATTTCTTGAGCTCAAATTCCCATGCTAATTTGTCCAATCCCTTCATGCCTTCATCTCTCCACCCTTTTGCCTCACAAAACTTGAAACCCTTTCCAGCTCAAAGTTTCAATTTCAAGCAGCTTCTTCATGCAGCTGATCACAACAATGCCAGTGCCGGCGGTGCCGGTGCAAGCTCCTCCGCGAAGGACGGGGCGGCCGGGAACTCGTAG 1179 40.97 MLRNNSKEKGCEAKEEGIIRSSNNSDGKYSFPKAPTSSRQWSGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLKLGQPSKVIDWLLDVTKLDIDNLPPLQIPAGFSPFHQQMLFPQYDPHHYYTSSSSSSSSSRFCNSFPPPPPFALDVKGSDAYQTTTTVEKTKLWDVDLTLQEKAASATAATTAAKGKWIDGSNNNSEVEDYNEQISSEKLLSMAICSSNLPNMVNNSTPYNNYNSSHDHHQPSYLSLSQFGNNNNNNNNNGIFPSQLVEAAQTSTSSSSNSSLFFTPYASYITNPFESHIHFLSSNSHANLSNPFMPSSLHPFASQNLKPFPAQSFNFKQLLHAADHNNASAGGAGASSSAKDGAAGNS 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24642297 24643475 - Lsi06G014070.1 Lsi06g01407 666137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01407 392 MobiDBLite consensus disorder prediction 1 40 - -
Lsi06g01407 392 PANTHER TRANSCRIPTION FACTOR TCP5 3 390 - -
Lsi06g01407 392 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
Lsi06g01407 392 Pfam TCP family transcription factor 58 194 IPR017887 -
Lsi06g01407 392 MobiDBLite consensus disorder prediction 1 21 - -
Lsi06g01407 392 MobiDBLite consensus disorder prediction 22 40 - -
Lsi06g01407 392 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 390 IPR005333 GO:0003700
Lsi06g01407 392 MobiDBLite consensus disorder prediction 375 392 - -
Lsi06g01407 392 MobiDBLite consensus disorder prediction 372 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01407 - - - csv:101218680 558.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01407 Lsi-Chr6:24642297 Lsi07g00302 Lsi-Chr7:3256067 8.53E-20 dispersed
Lsi06g01407 Lsi-Chr6:24642297 Lsi07g00939 Lsi-Chr7:11635086 7.50E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g460 Blo04g00796 . . . Bpe12g00521 . Bma06g00019 . Cmo13g01114 . . Cma11g00212 Car10g00278 Car11g00191 Sed08g0281 Cpe20g00081 Cpe04g01456 Bhi02g00091 Tan09g2038 Cmetu07g0568 . Hepe09g0277 . . Cla06g01535 Cam06g1693 Cec06g1756 Cco06g1755 Clacu06g1661 Cmu06g1607 Cre06g2419 . . . . . Csa01g00607 Chy12g01493 Cme12g01933 . . Bda11g01762 Bda14g00885 . Bpe15g00574 Bma03g00857 Bma08g00244 Sed01g2290 Cmo10g00314 Cmo11g00214 Cma13g01069 . Car13g00905 . . Cpe18g00710 Bhi08g01077 Tan05g2351 Cmetu12g1931 Lac10g0172 Hepe07g2456 . . Cla04g01148 Cam04g1204 Cec01g1716 Cco01g1761 Clacu04g1231 Cmu04g1211 Cre01g1507 Lsi06g01407 Csa01g00299 Chy02g02437 Cme02g01824
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00863 . 50 270 TCP Transcription Factor Family AT5G23280 64.0 1.7e-66 249.6
Lsi04g00792 . 37 258 TCP Transcription Factor Family AT5G23280 60.3 1.6e-61 233.0
Lsi09g01921 . 59 337 TCP Transcription Factor Family AT2G45680 54.1 2.0e-65 246.5
Lsi04g00434 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Lsi02g00060 CCT,ECH 17 115 TCP Transcription Factor Family AT3G47620 83.8 2.7e-39 160.2
Lsi04g00710 . 135 217 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Lsi04g00710 . 135 227 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Lsi07g01491 . 48 315 TCP Transcription Factor Family AT3G27010 56.9 1.5e-59 226.9
Lsi09g00863 . 46 269 TCP Transcription Factor Family AT5G08330 62.1 1.2e-64 243.4
Lsi04g00792 . 9 256 TCP Transcription Factor Family AT5G08330 56.0 8.4e-63 237.3
Lsi04g00710 . 134 365 TCP Transcription Factor Family AT1G35560 50.4 4.7e-43 172.2
Lsi06g01407 . 32 134 TCP Transcription Factor Family AT5G60970 74.0 8.8e-40 161.4
Lsi07g00939 . 32 138 TCP Transcription Factor Family AT3G02150 69.9 2.4e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006954 1 1 2 2 3 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25534 PF03634 TCP 2.60E-23 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01407 Lsi_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.227806 0.414663 0.0