Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01407 ATGTTGAGAAATAATTCAAAAGAAAAGGGTTGTGAAGCAAAAGAAGAAGGAATTATTAGAAGTAGTAATAATAGTGATGGAAAATATAGTTTCCCCAAGGCTCCAACAAGTTCAAGACAATGGTCAGGATTTAGAAATCCAAGAATTGTTAGAGTTTCTCGTTCATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGTACAATTAGAGGTTTGAGAGATAGAAGGATTAGACTTTCAGTTCCAACTGCAATTCAACTCTATGATCTTCAAGACAAGCTCAAACTTGGCCAACCTAGTAAGGTCATTGATTGGCTTCTTGACGTCACCAAACTCGACATCGACAACCTCCCTCCGCTCCAAATCCCCGCCGGTTTCTCTCCCTTCCACCAACAAATGCTCTTCCCTCAATACGATCCTCATCATTATTACACTTCTTCTTCTTCTTCTTCTTCCTCTTCCCGATTTTGTAATTCGTTCCCTCCTCCTCCTCCCTTTGCGCTCGACGTAAAGGGTAGTGATGCGTATCAGACGACGACAACGGTTGAAAAAACAAAGCTTTGGGATGTGGATTTAACATTACAGGAAAAAGCAGCATCAGCGACGGCGGCAACGACGGCGGCAAAAGGGAAGTGGATTGATGGAAGTAATAATAATAGTGAAGTAGAAGATTACAATGAGCAAATTTCATCTGAAAAGCTCTTATCAATGGCTATTTGTTCTTCAAATTTACCCAACATGGTAAACAATTCCACTCCTTACAATAACTACAACTCTTCTCATGATCATCATCAACCTTCTTATTTATCTCTTTCACAATTTGGGAACAACAACAACAACAATAATAATAATGGGATTTTCCCATCACAATTAGTTGAGGCTGCTCAAACAAGTACTTCATCATCTTCTAATTCTTCACTATTTTTCACTCCTTATGCTTCATATATTACCAATCCATTTGAAAGCCATATCCATTTCTTGAGCTCAAATTCCCATGCTAATTTGTCCAATCCCTTCATGCCTTCATCTCTCCACCCTTTTGCCTCACAAAACTTGAAACCCTTTCCAGCTCAAAGTTTCAATTTCAAGCAGCTTCTTCATGCAGCTGATCACAACAATGCCAGTGCCGGCGGTGCCGGTGCAAGCTCCTCCGCGAAGGACGGGGCGGCCGGGAACTCGTAG 1179 40.97 MLRNNSKEKGCEAKEEGIIRSSNNSDGKYSFPKAPTSSRQWSGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLKLGQPSKVIDWLLDVTKLDIDNLPPLQIPAGFSPFHQQMLFPQYDPHHYYTSSSSSSSSSRFCNSFPPPPPFALDVKGSDAYQTTTTVEKTKLWDVDLTLQEKAASATAATTAAKGKWIDGSNNNSEVEDYNEQISSEKLLSMAICSSNLPNMVNNSTPYNNYNSSHDHHQPSYLSLSQFGNNNNNNNNNGIFPSQLVEAAQTSTSSSSNSSLFFTPYASYITNPFESHIHFLSSNSHANLSNPFMPSSLHPFASQNLKPFPAQSFNFKQLLHAADHNNASAGGAGASSSAKDGAAGNS 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24642297 24643475 - Lsi06G014070.1 Lsi06g01407 666137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01407 392 MobiDBLite consensus disorder prediction 1 40 - -
Lsi06g01407 392 PANTHER TRANSCRIPTION FACTOR TCP5 3 390 - -
Lsi06g01407 392 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
Lsi06g01407 392 Pfam TCP family transcription factor 58 194 IPR017887 -
Lsi06g01407 392 MobiDBLite consensus disorder prediction 1 21 - -
Lsi06g01407 392 MobiDBLite consensus disorder prediction 22 40 - -
Lsi06g01407 392 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 390 IPR005333 GO:0003700
Lsi06g01407 392 MobiDBLite consensus disorder prediction 375 392 - -
Lsi06g01407 392 MobiDBLite consensus disorder prediction 372 392 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01407 Lsi-Chr6:24642297 Lsi07g00302 Lsi-Chr7:3256067 8.53E-20 dispersed
Lsi06g01407 Lsi-Chr6:24642297 Lsi07g00939 Lsi-Chr7:11635086 7.50E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25534 PF03634 TCP 2.60E-23 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01407 - - csv:101218680 558.14