Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01410 ATGGCGAACGCACCAACCGCTGGCGGAATATCAAAGATTTTGTCTAATCCATCCCCGGACTCCCCTTCCGATGTCCCGGACGTTGTGGTTCAGGTCACCGATCTCAAGGCGACCGGAAATCGCTACATGTTTACTGCTAACGACGGGGAAATGAAGCTTAAAGCTATTCTTCCATCAAACCTGACGTCTGACGTCATATCTGGAAATATTCAAAACTTGGGTCTTATTCGCATTCTTGACTACTCTCTCAATGATATTCCGAACAAGCCAGAAAAGTATTTAATCGTGACGAAATGTGAGGTGGTTTCTCCTGCTCTAGAAAAGGAGGTAAAAACTGAGGTTAAGAAAGAGGAAGCAGGTATTATTTTGAAATCGAAGCCAGAGGTTGACGATAAGAGCACATTTAACAATGGATCTGGTATTCTTTTAAAACCAAAGCGAGAAATGGTTGCCAAATCAGCTGCTCAGATTGTACACGAGCAGCGTACGAATATGGCACCATCTGCACGGATGTCCATGACAAGGCGAGTTCATCCCCTTGTCTACTTAAATCCTTACCAAGGAGATTGGACCATCAAAGTCCGTGTTACGGACAAGGGAAACCTGCGTACATACAAGAATGCTCAAGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACGGATGAAGATGGCACACAAATACAGGCAACGATGTTCAATGATGCTGCAAGGAAGTTCTATGAGAAGTTTTCCCTTGGCAAAGTTTACTACATTTCCAGGGGAACTTTGAAAGTTGCTAATAAGAAATTTAAGACGGTTCAAAATGATTATGAAATGACTTTAAATGTGAATTCTCAAGTAGACGAGGTTAGCAATGAAGCTGCTTTCGTTCCTGAAACAAAATATAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGGGACCTTGTTGATGTTATTGGAGTTGTTCAAAGTGTTTCTCCTACAATGAGCATTCGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACCATTGCTGATGAGACGAAGAAGACAGTTGTGATATCTTTATGGAATGATCTTGCGACCACTGTGGGGCAGGAGTTGCTTGACATTGCCGACCAATCTCCTATAATTGCATTGAAGTATCTTAGAGTTGGTGACTTTCAAGGTGTATCTTTGTCGACCATAAGTAGGAGCTCAATTATAATAAATCCAGACATAAAGGAAGCACATGATTTGAGATCCTGGTATGACTCTGAAGGAAAAGCCGTATCCATGTCTTCTGTAAGCTCTGGCCTTAGCCCATCAACCAAGAGCGGGTCTAGGTCCATGTACTCTGACCGGATCTCCCTATCTCATATACTCCAAGACAAATCTTTGGGAGAAGAAAAGCCCATGTTCTTCAGCACTAGAGCATATGTCAGCTTTATAAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAAACATGCAACAAGAAAGTGACTGAAGCCATTGGATCTGGATATTGGTGCGACAATTGTCAGAAAAATGACGAAGAATGCAGTTTAAGGTACATAATGGTTGTGAGAGTTTCTGATGCAAGTGGTGAAGCTTGGTTCTCTACATTCAATGAAGAAGCAGAGAGAATTATTGGATGCTCTGCTGATGAGCTTGACCAACTCAAATCACAGATTGGAGAGGAGAATTCATATCAACTGAAACTCAAAGAAGCCACTTGGGTTCCTCATTTATTTCGGGTTAGTGTTTCTCAAAATGAATACAACAATGAGAAGAGACAAAGGATCACTGTCAGGTCAGTTGCTCCAGTTGACTTTGCTGCTGAATCCAGATTTTTGCTAGAAGAGATAGCAAAGATGAAAGCTTCCTAA 1872 41.61 MANAPTAGGISKILSNPSPDSPSDVPDVVVQVTDLKATGNRYMFTANDGEMKLKAILPSNLTSDVISGNIQNLGLIRILDYSLNDIPNKPEKYLIVTKCEVVSPALEKEVKTEVKKEEAGIILKSKPEVDDKSTFNNGSGILLKPKREMVAKSAAQIVHEQRTNMAPSARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAARKFYEKFSLGKVYYISRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVSNEAAFVPETKYNFVKIDMLGPHVNGRDLVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGQELLDIADQSPIIALKYLRVGDFQGVSLSTISRSSIIINPDIKEAHDLRSWYDSEGKAVSMSSVSSGLSPSTKSGSRSMYSDRISLSHILQDKSLGEEKPMFFSTRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDASGEAWFSTFNEEAERIIGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24675472 24679035 - Lsi06G014100.1 Lsi06g01410 666140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01410 623 Gene3D - 174 282 IPR012340 -
Lsi06g01410 623 CDD RPA1_DBD_B 312 418 - -
Lsi06g01410 623 MobiDBLite consensus disorder prediction 1 25 - -
Lsi06g01410 623 SUPERFAMILY Nucleic acid-binding proteins 3 107 IPR012340 -
Lsi06g01410 623 SUPERFAMILY Nucleic acid-binding proteins 446 620 IPR012340 -
Lsi06g01410 623 SUPERFAMILY Nucleic acid-binding proteins 178 286 IPR012340 -
Lsi06g01410 623 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 6 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lsi06g01410 623 Gene3D - 432 620 IPR012340 -
Lsi06g01410 623 Pfam Replication factor-A C terminal domain 467 613 IPR013955 -
Lsi06g01410 623 SUPERFAMILY Nucleic acid-binding proteins 295 424 IPR012340 -
Lsi06g01410 623 Coils Coil 538 558 - -
Lsi06g01410 623 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lsi06g01410 623 Gene3D - 6 112 IPR012340 -
Lsi06g01410 623 Pfam OB-fold nucleic acid binding domain 190 275 IPR004365 GO:0003676
Lsi06g01410 623 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 7 618 - -
Lsi06g01410 623 PANTHER REPLICATION FACTOR A 1, RFA1 7 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lsi06g01410 623 CDD RPA1_DBD_C 455 619 IPR013955 -
Lsi06g01410 623 CDD RPA1_DBD_A 179 282 - -
Lsi06g01410 623 Pfam Replication protein A OB domain 308 404 IPR031657 -
Lsi06g01410 623 Gene3D - 290 431 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01410 Lsi-Chr6:24675472 Lsi11g00167 Lsi-Chr11:1774806 1.72E-99 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01410 K07466 - csv:101208545 1130.16