Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01411 ATGGAATCTGCGCAAAAGATCGAGGCCGGTGAATCAAAAACACATTCTTTCAACAGTACAGACAAAGTTGGTCTTTCTATTCCAAGCAAAAAATTAGTCTCTTCCTTATCCTCAGCATCATATTCCTCCTCTGACAGCTCATTTGAATTGATTGTAACTGTGCCCAACGATTTCATTAGTGGTACAAGTGACCCTTTGGAAAAGGATGAGTTGCATGTTGTAGGGCGCTCGGACTCCGAATTTGAGTTTATTACCAGTGATGATACTGAGACTCATCCTCCAAGGGCTGATCTTCCCGGTGCAGCAAAATCAAGCCGCTCATTATCACGGTCATCGTCATCCGCATCTGAATCTTCCCTGCACGATCATGTGATTGAACTCACAAAGCCTGGAAAGTACGAAGATACCAACACTATGGAGTCAGATTTGAATAAAACATTACCAGGTCCTAAACCTGGTGAAACCAGTAATGTTGAAAGTAGAAAAAATCTACAAACTTGTTCTTCCGCCTCATCTTCCTCATCGTCCGAATCTGAAAATGAACCTAAAGTTAAACTTCAAAAGGGTGGAGATGTTGCTGATAACTTATTGTCAAAAAATCCTAACTCTCCAAGCATGGAAAAGGACAACGGGTTGGTTGCAGATTTCAGTGATGACGATGTTCCCATCAACTCTATGCCTTGCAATGGGCAATCAGCAGTTTCAATCTCAGGCAGCGAGACACCTACTCAATATCCTCCAACTCAAGTGATGGAGAGAGCCGATGATCCTACTTCCCCTGCATATAGAATTCCATCCCGTGTCTTTTCTAGAACTAAATCTACAGCGCCTATGGAATGGAGTGTTGCTTCAAATGAATCACTGTTCAGCATTCAGATGGGGAACATGAGTTTTACCAGAGAACAGTTGTGTTGGCTAGGAAAATCAGGTGAGCTATGTAGGCCTGGTGAATCAGCCCTTGACGTATCCCAACATTTGGCTATGAAAACTTCTGATTGTGGATTGAAAAGCTCCCGTCCAGATGGTGATCTAGCAGCAACTGAAGCACGAGCTGCAGAAACAATGAGGGAGGTTATAAGAGAAAACTCTGAGAACCATCGCAAGGAGAGTTCGACTCTAACAGAGTCGTCGTCTCAATCAGCCAGCATTTCTCATCAGTCAGAAGGCAGCACAAAATCTTTCCAATTTCCAATATTGACAGGAGAAGGAGGAAAAAGCATTTCATTGAAGGGAGGCGATCTAGAGAAGGCGAAGCAAGAGGGAAAACCAGAATTACCACAACCATCTTCAAACCCTCAGACCCCAAACGAATCGAGTTCGGACGGATCTCCGAAAGCAGCTACAAATGTGGGGCCAAAGAGATGGTTTTCTTGCTTTTCTTGCTGCCCGTTCTGTAGTTAA 1401 43.75 MESAQKIEAGESKTHSFNSTDKVGLSIPSKKLVSSLSSASYSSSDSSFELIVTVPNDFISGTSDPLEKDELHVVGRSDSEFEFITSDDTETHPPRADLPGAAKSSRSLSRSSSSASESSLHDHVIELTKPGKYEDTNTMESDLNKTLPGPKPGETSNVESRKNLQTCSSASSSSSSESENEPKVKLQKGGDVADNLLSKNPNSPSMEKDNGLVADFSDDDVPINSMPCNGQSAVSISGSETPTQYPPTQVMERADDPTSPAYRIPSRVFSRTKSTAPMEWSVASNESLFSIQMGNMSFTREQLCWLGKSGELCRPGESALDVSQHLAMKTSDCGLKSSRPDGDLAATEARAAETMREVIRENSENHRKESSTLTESSSQSASISHQSEGSTKSFQFPILTGEGGKSISLKGGDLEKAKQEGKPELPQPSSNPQTPNESSSDGSPKAATNVGPKRWFSCFSCCPFCS 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24682832 24684864 - Lsi06G014110.1 Lsi06g01411 666141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01411 466 MobiDBLite consensus disorder prediction 82 263 - -
Lsi06g01411 466 MobiDBLite consensus disorder prediction 104 121 - -
Lsi06g01411 466 MobiDBLite consensus disorder prediction 224 248 - -
Lsi06g01411 466 MobiDBLite consensus disorder prediction 122 139 - -
Lsi06g01411 466 PANTHER SMOOTHELIN-LIKE PROTEIN 1 8 466 - -
Lsi06g01411 466 MobiDBLite consensus disorder prediction 361 451 - -
Lsi06g01411 466 MobiDBLite consensus disorder prediction 424 446 - -
Lsi06g01411 466 PANTHER SUPPRESSOR SRP40-LIKE PROTEIN 8 466 - -
Lsi06g01411 466 MobiDBLite consensus disorder prediction 140 180 - -
Lsi06g01411 466 MobiDBLite consensus disorder prediction 1 23 - -
Lsi06g01411 466 MobiDBLite consensus disorder prediction 372 397 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01411 - - - bhj:120071920 669.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00170 Lsi-Chr3:2280002 Lsi06g01411 Lsi-Chr6:24682832 1.12E-10 dispersed
Lsi03g00171 Lsi-Chr3:2284326 Lsi06g01411 Lsi-Chr6:24682832 5.68E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g666 Blo04g00791 Blo16g00165 . . . Bpe13g00315 Bma06g00149 . . . . . . Car11g00188 Sed08g0276 . . Bhi02g00094 Tan09g2043 Cmetu02g1345 . Hepe09g0274 . . Cla06g01538 Cam06g1697 Cec06g1759 Cco06g1758 Clacu06g1664 Cmu06g1610 Cre06g2423 . . . . . . . . . . Bda11g01731 Bda14g00882 . Bpe15g00579 Bma03g00852 . . . . . . . . . Cpe18g00708 . . . . . . . . . . . . . . Lsi06g01411 Csa01g00296 Chy02g02441 Cme02g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006345 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01411 Lsi_Chr06 FPKM 0.258681 0.0 0.052181 0.151459 1.232791 0.121038 0.907174 0.123975 0.313969 0.109405