Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01412 ATGGCTTTCCTAAGTAAGGTTAGAAATATTCTGAGGCAGGGTGCAAATAAGAGGATTGGAGTAGATTTGCAGCCTTCCAGTTTGTCCATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTGTCGGAGGTATTTCATACAGCACTGATGATCAAAGTCTCAGGGAAGCCTTTACTAAATATGGGGAAGTAGTCGAAGTCCGAAGTTTAGTTATAATTATAAATGTTGGTTTCGTTGTTTACCCTTCTTTCTTTGCCACTGTGATAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGACCTTCATGGTCGTCGAGTGAAAGTGAATTATGCTAATGATAGAACTCGTGGTTTTGGTGGTGGTGGTTATGGTGGGGGCGGCTACGGTGGTGGTGGTTATGGTGGGGGCGGCGGCTACAGTGGTGGTGGGGCTTATGGCGGTGGCAGCTATAGCGGTGGTGGTTCTGGAGGTTATGGTGGCGGCGGGAGTGGAGGAGGTTATGGTGATGCTAGTGGTGGATATTCTGGGGCGGGATATAGTTCTGGAGGCAACTATAGTCAAGGAAGTGGAGGAAATTATAATAACGATTTTGCCAACGACAACCGTGGAAGTGTTGGTACAGGTGGTGGTGGCTTTGGTGGGAATGATGCTGGCTTCAACGCTGCTAGCAATTTTGCTAGTGGCGGCAGCGACTATTTTGCCAACACCAACAGTGGGTCTGATGCAAGCTCTGGGTTTGGAGGATATACTGGCGGGGATCAATTTGGCAGCAATGAAACAAACACCACGAATGCTTCTGGAGATCAAGGCCTAGGGGAGCAACCGGAAGGAAATGATAGGGACGAAGACGACGCAGATGACTTTGCTAAAAGAGCCTAA 972 48.15 MAFLSKVRNILRQGANKRIGVDLQPSSLSICQAVRWMSSMQSSKLFVGGISYSTDDQSLREAFTKYGEVVEVRSLVIIINVGFVVYPSFFATVIARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVKVNYANDRTRGFGGGGYGGGGYGGGGYGGGGGYSGGGAYGGGSYSGGGSGGYGGGGSGGGYGDASGGYSGAGYSSGGNYSQGSGGNYNNDFANDNRGSVGTGGGGFGGNDAGFNAASNFASGGSDYFANTNSGSDASSGFGGYTGGDQFGSNETNTTNASGDQGLGEQPEGNDRDEDDADDFAKRA 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24692045 24695306 + Lsi06G014120.1 Lsi06g01412 666142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01412 323 Gene3D - 33 178 IPR012677 -
Lsi06g01412 323 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 95 322 - -
Lsi06g01412 323 PRINTS Eggshell protein signature 161 176 - -
Lsi06g01412 323 PRINTS Eggshell protein signature 189 199 - -
Lsi06g01412 323 PRINTS Eggshell protein signature 237 255 - -
Lsi06g01412 323 PRINTS Eggshell protein signature 39 55 - -
Lsi06g01412 323 SMART rrm1_1 44 140 IPR000504 GO:0003723
Lsi06g01412 323 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 73 - -
Lsi06g01412 323 MobiDBLite consensus disorder prediction 267 323 - -
Lsi06g01412 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 144 IPR000504 GO:0003723
Lsi06g01412 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 138 IPR000504 GO:0003723
Lsi06g01412 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 86 IPR000504 GO:0003723
Lsi06g01412 323 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 73 - -
Lsi06g01412 323 SUPERFAMILY RNA-binding domain, RBD 27 159 IPR035979 GO:0003676
Lsi06g01412 323 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 95 322 - -
Lsi06g01412 323 MobiDBLite consensus disorder prediction 267 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01412 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 - csv:101218446 209.149
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00118 Lsi06g01412 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01412 Lsi-Chr6:24692045 Lsi10g00366 Lsi-Chr10:5657381 7.29E-17 dispersed
Lsi10g00099 Lsi-Chr10:1564931 Lsi06g01412 Lsi-Chr6:24692045 1.36E-15 transposed
Lsi02g00118 Lsi-Chr2:977867 Lsi06g01412 Lsi-Chr6:24692045 2.08E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g657 Blo04g00789 Blo16g00169 Bda06g00522 Bda15g00622 . Bpe13g00312 Bma06g00152 Bma12g00965 Cmo13g01121 . . . . . Sed08g0275 Cpe20g00073 Cpe04g01460 Bhi02g00095 Tan09g2044 Cmetu02g1487 . Hepe09g0273 . . Cla06g01539 Cam06g1698 Cec06g1760 Cco06g1759 Clacu06g1665 Cmu06g1611 Cre06g2424 Cone2ag0802 Cone16ag0207 Cone13ag0035 Cone19ag0044 Lsi02g00118 Csa01g00598 Chy12g01500 Cme12g01944 . Blo15g00338 Bda11g01723 Bda14g00879 Bpe07g00756 Bpe15g00581 Bma03g00850 . Sed08g2119 . Cmo11g00211 Cma13g01075 . Car13g00911 Car18g00005 . Cpe18g00707 Bhi08g01085 Tan05g2363 Cmetu12g0852 Lac10g0147 Hepe07g2465 . . Cla04g01155 Cam04g1213 Cec01g1724 Cco01g1769 Clacu04g1240 Cmu04g1219 Cre01g1515 Lsi06g01412 Csa01g00294 Chy02g02442 Cme02g01829
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000800 6 2 2 5 5 2 3 2 2 3 2 2 5 3 2 4 2 6 3 2 2 3 3 2 2 2 2 8 3 2 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01412 Lsi_Chr06 FPKM 8.260841 10.483662 8.430778 8.926908 9.554697 9.070923 9.798198 11.636955 13.973397 12.504185