Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01417 ATGGCGGCTCATTCCTCAACTTCCAGTAACGACCGAGCTTTGAGAACTGCAACTTCTAATCAGTTCTTCGCATGGAGGGAGTTTTTATGGGGAGCTATCGCTGGAGCATTTGGAGAAGGAATGATGCACCCTATTGATACCATAAAGACTCGGATTCAAAGCCAGGCTATTCTATATGGAAGTCAAAATCAAAAGAGCCTGTTGCAGATGGTCCAATCTGTATGGAAAATTGACGGATTAAGGGGCTTTTATAGGGGCATAGCTCCTGGAGTTACTGGTTCACTTGCCACTGGAGCTACATACTTTGGTGTTATTGAGTCCAGTAAGAAATGGATCGAAGAAACACATCCTAGCCTTGGCGGTCACTGGGCTCATTTCATTGCTGGAGCAGTTGGTGATACACTGGGTTCATTTGTGTATGTTCCATGTGAAGTTATGAAGCAACGAATGCAAGTTCAAGGCACAAGGTCATCTTGGAGTTCCCTTCCCATGAAGGATAATATCTCTATGAATCATGGTGGGCAAATGTATGGCTATTATTCAGGGATGTTCCAGGCTGGTCGTTCAATCCTGAAGGAACAAGGATTAAGAGGATTATATGCAGGATATTGGTCTACACTTGCCAGGGATGTGCCGTTTGCTGGTCTAATGGTCATGTTTTATGAGGCGCTAAAAGATTTCACTGAGTATGGGAAGCAAAGATGGATGCCTAATTCAGATGTTAATAGTTCCTTGGAAGGACTTGTGTTGGGGGGATTAGCTGGTGGTATCAGTGCTTATCTGACGACTCCCTTGGATGTTGTAAAAACAAGAATGCAAGTTCAGGGATCAACTTTAAGGTACAACGGCTGGTTGGATGCGGTGAGAACTATCTGGCGGAGTGAAGGAACAAAGGGAATGTTTAGGGGTAGTATACCCAGAATCACATGGTATATTCCAGCTTCTGCTCTAACTTTTATGGCTGTAGAATTTCTGAGGGACCATTTCAATGAAAGATTGGATGATGAATCCAAAAAAGAAGCTGCTACTTTATCGGGTGATAGAAAAGGAACATTGCGAGAAGCGGCATTGACTGCTCGAGACTGA 1086 43.83 MAAHSSTSSNDRALRTATSNQFFAWREFLWGAIAGAFGEGMMHPIDTIKTRIQSQAILYGSQNQKSLLQMVQSVWKIDGLRGFYRGIAPGVTGSLATGATYFGVIESSKKWIEETHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTRSSWSSLPMKDNISMNHGGQMYGYYSGMFQAGRSILKEQGLRGLYAGYWSTLARDVPFAGLMVMFYEALKDFTEYGKQRWMPNSDVNSSLEGLVLGGLAGGISAYLTTPLDVVKTRMQVQGSTLRYNGWLDAVRTIWRSEGTKGMFRGSIPRITWYIPASALTFMAVEFLRDHFNERLDDESKKEAATLSGDRKGTLREAALTARD 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24728079 24732166 + Lsi06G014170.1 Lsi06g01417 666147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01417 361 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 1 351 - -
Lsi06g01417 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 227 IPR018108 -
Lsi06g01417 361 Gene3D Mitochondrial carrier domain 174 347 IPR023395 -
Lsi06g01417 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 242 328 IPR018108 -
Lsi06g01417 361 Gene3D Mitochondrial carrier domain 4 164 IPR023395 -
Lsi06g01417 361 PRINTS Mitochondrial carrier protein signature 40 54 IPR002067 GO:0055085
Lsi06g01417 361 PRINTS Mitochondrial carrier protein signature 200 218 IPR002067 GO:0055085
Lsi06g01417 361 PRINTS Mitochondrial carrier protein signature 27 40 IPR002067 GO:0055085
Lsi06g01417 361 PRINTS Mitochondrial carrier protein signature 251 273 IPR002067 GO:0055085
Lsi06g01417 361 SUPERFAMILY Mitochondrial carrier 23 325 IPR023395 -
Lsi06g01417 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 111 IPR018108 -
Lsi06g01417 361 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 351 - -
Lsi06g01417 361 Pfam Mitochondrial carrier protein 23 113 IPR018108 -
Lsi06g01417 361 Pfam Mitochondrial carrier protein 245 331 IPR018108 -
Lsi06g01417 361 Pfam Mitochondrial carrier protein 122 227 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01417 - - - csv:101208060 702.205
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02791 Lsi-Chr2:34149266 Lsi06g01417 Lsi-Chr6:24728079 4.46E-06 dispersed
Lsi04g00053 Lsi-Chr4:671238 Lsi06g01417 Lsi-Chr6:24728079 3.67E-30 dispersed
Lsi06g01417 Lsi-Chr6:24728079 Lsi08g00534 Lsi-Chr8:13292505 9.27E-36 dispersed
Lsi09g00256 Lsi-Chr9:2660989 Lsi06g01417 Lsi-Chr6:24728079 2.54E-08 dispersed
Lsi06g01417 Lsi-Chr6:24728079 Lsi08g01194 Lsi-Chr8:20513216 3.93E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g653 . . Bda06g00525 . . . . Bma12g00968 . . . . . Car11g00182 . . Cpe04g01464 Bhi02g00689 . . . . . . Cla06g01542 Cam06g1702 Cec06g1764 Cco06g1763 Clacu06g1669 Cmu06g1615 Cre06g2428 . . . . . . . . . Blo15g00333 . . Bpe07g00758 . . . . . Cmo11g00207 . . . . . Cpe18g00704 . . . . . . . . . . . . . . Lsi06g01417 Csa01g00290 Chy02g02445 Cme02g01833
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009832 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 0 2 1 1 1 0 1 1 1 1 5 0 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01417 Lsi_Chr06 FPKM 1.351763 1.124195 58.527828 59.304634 320.252991 306.091156 315.771301 44.288158 47.162907 42.056274
Lsi06g01417 Lsi_Chr00 FPKM 1.351763 1.124195 58.648094 59.246109 319.941864 306.388397 315.771301 44.286827 47.162907 42.056274