Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01418 ATGGCGTCCGCCAAGCGATGCCATTACGAGGTCCTCGGCCTCCACATCGACTGCTCCGCCGACGAGATTCGATCGGCGTACCGGAAGCTAGCCCTTCAGCGCCACCCCGATAAGCTCGTCCAGTCCGGTTTGTCGCAAGCTGATGCCACCGCTCAGTTTCAAGAGCTTCAGCAGGCGTACGAGGTCCTCTCCGATCCTAAAGAACGCGCTTGGTACGATTCTCATCGTTCTCAAATCCTCTTTTCTGATGCCGGATCGGTTAATTCCAACTCTGTTGTTCCCAATCTCTTTCCGTTCTTCTCCAATACCGTTTATTCTGGCTATTCGGATTCTGGACGAGGATTCTATAAGATCTATTCCGACCTTTTTGACAAAATTTACGGTAATGAGATTAATTTCGCTAAGAAATTAGGATTGCGTTTGGATATGGTTCGTGAAGCTCCGGTTATGGGGAATTTAGATAGTCCGTATACACAGGTGACTGCGTTTTATAATTACTGGCTTGGGTTTTGTACGGTTATGGATTTTTGCTGGGCTGATCAGTACGATGTCATGGCCGGTCCCAACCGGAAATCGAGGAGGTTAATGGAGGAGGATAATAAGAAGCTGAGGAAGAAGGCAAAGAGGGAGTACAATGAGACAGTGAGAGGTTTGGCTGAATTTGTGAAGAAGAGAGATAAGAGGGTGATTGATATGGCTATGAAAAGGAACATTGAAATGGAGAAGAAGAAGGAAGAGGAGAGGGAAAGGAAAAAAAGGTTAGAAAGGGAGAAGATGGAGAAGCTTAGGGCATATGAGGAACCAGATTGGGCAAAAGTTGAGGAAGTTGAGGAGGATGAGGAAGATGGGTTTGAGGAAGAGAATAGGATAGGGAAAGAGCTGTACTGTGTTTTGTGTGGGAAAAAGTTCAAGAGTGAAAAGCAATGGAAGAATCACGAACAGTCAAAGAAGCACAAGGAGAAGGTTGCAGAGTTCAAAGAATCACTAGATGATGAGGATGAATCTGAAGAATTTGTTGATGAAGGAGAAGGTGAAGAAGAAACAACACTGCTGGATGATGGGATAGATAAACTAGGAGAGGAGTTCAAGGAAAGTTTAGATATTGAAGCAGAAGAAACCGAAAGTGGGGGAGAAGAACTTAGTGGGAGTGAATACAATGATGTCCATGAAGTTGATAGATCAGATATGGTTGCTGAGGCACTTGGATCGAATGACGACGACGAAGACGAAACAGATATTCTTGAAGCAATGGCTGCTGGGTTGCGAAACAGGAAAGTTGCAACTTCAGTGAATCAGCCTGAAGCTTCCCCAGTCAAAGCTCATTTTGAAAATGAGAAGGATGAGCCTAATCCAGCAGAGTACGAAAATGGTAAGAGGGGAAAAAAGAGTCGTGGAGCCAAAAAGAAGGGCAAGGGAAATGATGAAGCTATGAATGAAACAGATTCTCGAAATGACAAAAACAACAGAGACGATTCATCATATCAGCAGGATTCCCCTTCCAATTCATTGCTTAACGATCAAAGTAGTGATAAGGGGGCCAGTGAGTTGGCTAAAGAACAAAGAACTTCAAGTAAATCTGCTGATCGGAAAGCAGTCGTGCAGAATGACACAAAGACCAACCCTAGACACTCATCTAAAGGAAAGAAATCCAAGGCAACATCAAAGGATTCTGGCAATTCATGCGAAACATGTGGAGAGCAGTTTGATTCAAGGAATAAACTACATAAGCATTTGGGAGCCACAGGACATGCTGCTTTAAAATATCGATGA 1770 44.12 MASAKRCHYEVLGLHIDCSADEIRSAYRKLALQRHPDKLVQSGLSQADATAQFQELQQAYEVLSDPKERAWYDSHRSQILFSDAGSVNSNSVVPNLFPFFSNTVYSGYSDSGRGFYKIYSDLFDKIYGNEINFAKKLGLRLDMVREAPVMGNLDSPYTQVTAFYNYWLGFCTVMDFCWADQYDVMAGPNRKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDKRVIDMAMKRNIEMEKKKEEERERKKRLEREKMEKLRAYEEPDWAKVEEVEEDEEDGFEEENRIGKELYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKESLDDEDESEEFVDEGEGEEETTLLDDGIDKLGEEFKESLDIEAEETESGGEELSGSEYNDVHEVDRSDMVAEALGSNDDDEDETDILEAMAAGLRNRKVATSVNQPEASPVKAHFENEKDEPNPAEYENGKRGKKSRGAKKKGKGNDEAMNETDSRNDKNNRDDSSYQQDSPSNSLLNDQSSDKGASELAKEQRTSSKSADRKAVVQNDTKTNPRHSSKGKKSKATSKDSGNSCETCGEQFDSRNKLHKHLGATGHAALKYR 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24733723 24736366 + Lsi06G014180.1 Lsi06g01418 666148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01418 589 MobiDBLite consensus disorder prediction 306 566 - -
Lsi06g01418 589 MobiDBLite consensus disorder prediction 493 511 - -
Lsi06g01418 589 MobiDBLite consensus disorder prediction 329 350 - -
Lsi06g01418 589 SUPERFAMILY Chaperone J-domain 4 97 IPR036869 -
Lsi06g01418 589 SMART dnaj_3 6 68 IPR001623 -
Lsi06g01418 589 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Lsi06g01418 589 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 589 IPR044648 -
Lsi06g01418 589 CDD DnaJ 7 65 IPR001623 -
Lsi06g01418 589 MobiDBLite consensus disorder prediction 439 460 - -
Lsi06g01418 589 SUPERFAMILY beta-beta-alpha zinc fingers 291 339 IPR036236 -
Lsi06g01418 589 Coils Coil 193 213 - -
Lsi06g01418 589 MobiDBLite consensus disorder prediction 512 536 - -
Lsi06g01418 589 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Lsi06g01418 589 SMART c2h2final6 294 318 IPR013087 -
Lsi06g01418 589 SMART c2h2final6 559 583 IPR013087 -
Lsi06g01418 589 ProSitePatterns Zinc finger C2H2 type domain signature. 561 583 IPR013087 -
Lsi06g01418 589 Gene3D Classic Zinc Finger 281 343 - -
Lsi06g01418 589 ProSiteProfiles Zinc finger C2H2 type domain profile. 559 588 IPR013087 -
Lsi06g01418 589 Gene3D DnaJ domain 1 90 IPR036869 -
Lsi06g01418 589 Pfam DnaJ domain 8 73 IPR001623 -
Lsi06g01418 589 MobiDBLite consensus disorder prediction 383 400 - -
Lsi06g01418 589 ProSitePatterns Zinc finger C2H2 type domain signature. 296 318 IPR013087 -
Lsi06g01418 589 Pfam Zinc-finger double-stranded RNA-binding 294 319 IPR022755 -
Lsi06g01418 589 Coils Coil 230 264 - -
Lsi06g01418 589 SMART ZnF_U1_5 291 325 IPR003604 GO:0003676|GO:0008270
Lsi06g01418 589 MobiDBLite consensus disorder prediction 306 328 - -
Lsi06g01418 589 MobiDBLite consensus disorder prediction 468 492 - -
Lsi06g01418 589 PRINTS DnaJ domain signature 27 42 IPR001623 -
Lsi06g01418 589 PRINTS DnaJ domain signature 48 68 IPR001623 -
Lsi06g01418 589 PRINTS DnaJ domain signature 9 27 IPR001623 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00159 Lsi-Chr5:2323763 Lsi06g01418 Lsi-Chr6:24733723 1.89E-19 dispersed
Lsi06g01418 Lsi-Chr6:24733723 Lsi09g00645 Lsi-Chr9:7204522 1.31E-13 dispersed
Lsi06g01418 Lsi-Chr6:24733723 Lsi04g00239 Lsi-Chr4:2424176 2.53E-10 transposed
Lsi06g01418 Lsi-Chr6:24733723 Lsi09g00617 Lsi-Chr9:6787713 3.55E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25535 PF00226 DnaJ 2.60E-21 CL0392 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01418 K09506 - csv:101217729 953.74