Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01420 ATGTCTTGGGTTATGCCTGTTTTAGCTATTGGGCTCCTTATTCTGGCCATGACTGGCCATTCAATCTTTGGTTTCTTCTGGCTCTCTCTTGAAATGCTGGTTTCTGAACTTTTAGGTGCAACATGGTGCGTTTGCAAGGATGGATTGGGTGATGCTGCTCTCCAGAAGACACTGGACTATGCTTGTGGAGCTGGGGCTGACTGTATCTCTATTCATCAAAATGGGGGCTGTTTCCTTCCCAACACCGTCAAGGCTCATTGTTCCTATGCTACTAATAGCTACTTTCAAAAGAAGGGTCAAGCTCTTGGTTCCTGTGATTTTTCTGGCACAGCAATGGTCACCACTACTGACCCCAGCATTTCAGGTTGCGTTTATCCTTCTAGCGCCAGCCCTGTAAGCAGTGGCACTATTCCAGTAACTGGGACTCCAACCACCACCAACCCAGGCACTGGATTAACTCCCACAACCAACACCCCATTTGGTTCTACAACACCCACCGGTGTCCTCGGCGGGAATGGGTTCGGTAACGGCAACAACGGTCTAGGACCATCAGGGGTCGGCGGGATGAACACCGACTACAGTGACAACGGATCGAGACTCCAACTCACTCTAATTGCCAATGGTCAGATTGGATTCCAATATGCAAGATGGCTAGCATGTGATGTTCCTGTTCTTGATTATCGGAAAGTTTTCGTCAGCTCAGGGACTTCGCTGGTTAGATTTTTTTTCGAAGAAATGGACGTTGATAGCTCCGGAACTAGGAAATTCAACGGAAGCAATGGCGATTCATGGAGGGTAGGAGTTTTGTACGACGAGAGGATGTGCAAGCATCACACACCCGGCGGAGATTACCATCCTGAGAATCCCAATCGAATTAGGGCCATTTGGAACAAGCTACAGACCGCTGGCATTCTTCAGAGGCATTATCATTTTTGCTTTTTCATTAGCGTTTTATTCTGTTGTGTATTTGCTTTATGCTGTGTGGAGTGTTGCGAAGGGTCATCCGAAGCTGCTTATCTGGCTGCTGGCTCTGTCATAGATGTTGCTGAAAGAGTAGCTAAAGGAGATTTAGATTCCGCCATTGCCATTGTGAGGCCGCCGGGTCATCATGCAGAACATGATAAAGCTATGGGGTTTTGTTTGTTCAACAACATAGCGGTGGCAGCAAGCTTTATTTTGAATGAAAGACCAGATTTGGGTATTAAGAAAATTTTAATTGTTGATTGGGATGTTCATCATGGCAATGCAACACAAAAGATGTTCTGGAAGGATCCCCGTGTTTTGTTCTTCTCTGTTCACCGGCACGAATTTGGAAGTTTTTATCCAGCCACAGATGATGGTTATTATACCATGGTTGGAGAAGGAGCTGGAGCAGGATATAATATAAATGTCCCTTGGGAGAATGCACGATGTGGGGATGCTGACTATCTAGCAGTTTGGGACCATATCTTGCTTCCTGTTGCCAAGGAATATAAACCTGATATGATCATAGTGTCTGCTGGATTTGATGCAGGTCTGATGCTACTAACTTGA 1533 45.99 MSWVMPVLAIGLLILAMTGHSIFGFFWLSLEMLVSELLGATWCVCKDGLGDAALQKTLDYACGAGADCISIHQNGGCFLPNTVKAHCSYATNSYFQKKGQALGSCDFSGTAMVTTTDPSISGCVYPSSASPVSSGTIPVTGTPTTTNPGTGLTPTTNTPFGSTTPTGVLGGNGFGNGNNGLGPSGVGGMNTDYSDNGSRLQLTLIANGQIGFQYARWLACDVPVLDYRKVFVSSGTSLVRFFFEEMDVDSSGTRKFNGSNGDSWRVGVLYDERMCKHHTPGGDYHPENPNRIRAIWNKLQTAGILQRHYHFCFFISVLFCCVFALCCVECCEGSSEAAYLAAGSVIDVAERVAKGDLDSAIAIVRPPGHHAEHDKAMGFCLFNNIAVAASFILNERPDLGIKKILIVDWDVHHGNATQKMFWKDPRVLFFSVHRHEFGSFYPATDDGYYTMVGEGAGAGYNINVPWENARCGDADYLAVWDHILLPVAKEYKPDMIIVSAGFDAGLMLLT 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24743658 24754309 - Lsi06G014200.1 Lsi06g01420 666150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01420 510 Pfam Histone deacetylase domain 331 504 IPR023801 -
Lsi06g01420 510 Gene3D Histone deacetylase domain 259 317 IPR037138 -
Lsi06g01420 510 PRINTS Histone deacetylase superfamily signature 493 503 IPR000286 -
Lsi06g01420 510 PRINTS Histone deacetylase superfamily signature 366 389 IPR000286 -
Lsi06g01420 510 CDD HDAC_classII 285 510 - -
Lsi06g01420 510 PANTHER BNAA09G05590D PROTEIN 257 307 - -
Lsi06g01420 510 SUPERFAMILY Arginase/deacetylase 264 504 IPR023696 -
Lsi06g01420 510 PANTHER BNAA09G05590D PROTEIN 334 505 - -
Lsi06g01420 510 Pfam X8 domain 41 112 IPR012946 -
Lsi06g01420 510 SMART X8_cls 41 125 IPR012946 -
Lsi06g01420 510 Gene3D Histone deacetylase domain 321 506 IPR037138 -
Lsi06g01420 510 PANTHER HISTONE DEACETYLASE 257 307 - -
Lsi06g01420 510 Gene3D - 35 131 - -
Lsi06g01420 510 MobiDBLite consensus disorder prediction 134 158 - -
Lsi06g01420 510 PANTHER HISTONE DEACETYLASE 334 505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01420 K11406 HDAC4_5; histone deacetylase 4/5 [EC:3.5.1.98] - csv:101207819 429.869
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00116 Lsi06g01420 CCT
Lsi02g00116 Lsi06g01420 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01420 Lsi-Chr6:24743658 Lsi08g00894 Lsi-Chr8:17309129 1.16E-41 dispersed
Lsi10g01182 Lsi-Chr10:16093008 Lsi06g01420 Lsi-Chr6:24743658 1.24E-10 dispersed
Lsi11g01321 Lsi-Chr11:21841481 Lsi06g01420 Lsi-Chr6:24743658 1.25E-15 dispersed
Lsi01g01162 Lsi-Chr1:9761848 Lsi06g01420 Lsi-Chr6:24743658 1.68E-29 transposed
Lsi02g01189 Lsi-Chr2:14982887 Lsi06g01420 Lsi-Chr6:24743658 9.76E-31 transposed
Lsi04g01944 Lsi-Chr4:26545720 Lsi06g01420 Lsi-Chr6:24743658 1.14E-23 transposed
Lsi06g00587 Lsi-Chr6:7939833 Lsi06g01420 Lsi-Chr6:24743658 7.38E-40 transposed
Lsi09g01139 Lsi-Chr9:18277785 Lsi06g01420 Lsi-Chr6:24743658 1.22E-29 transposed
Lsi11g01589 Lsi-Chr11:24284822 Lsi06g01420 Lsi-Chr6:24743658 7.68E-19 transposed
Lsi02g00116 Lsi-Chr2:944509 Lsi06g01420 Lsi-Chr6:24743658 2.90E-46 wgd
Lsi04g00365 Lsi-Chr4:3646987 Lsi06g01420 Lsi-Chr6:24743658 1.58E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g649 . Blo16g00170 Bda06g00526 . . Bpe13g00310 . Bma12g00970 . . . . . Car11g00180 Sed12g1997 . Cpe04g01466 Bhi02g00692 Tan09g2050 Cmetu02g1984 . . . . Cla06g01545 Cam06g1705 Cec06g1766 Cco06g1766 Clacu06g1672 Cmu06g1618 Cre06g2431 Cone2ag0806 Cone16ag0202 Cone13ag0038 . Lsi02g00116 Csa01g00594 Chy12g01504 Cme12g01948 . . Bda11g01721 Bda14g00876 Bpe07g00760 . Bma03g00848 . . . Cmo11g00205 . . . Car18g00006 . Cpe18g00701 Bhi08g01093 . . Lac10g0143 . . . Cla04g01158 Cam04g1217 Cec01g1728 Cco01g1773 Clacu04g1244 Cmu04g1223 Cre01g1519 Lsi06g01420 Csa01g00286 Chy02g02449 Cme02g01836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000407 3 5 2 5 4 4 7 5 3 3 3 4 5 4 3 6 4 7 7 4 4 4 3 3 3 4 4 4 5 2 124
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01420 Lsi_Chr06 FPKM 3.309791 3.001961 11.971581 11.966129 0.501191 0.526014 0.50263 0.560494 0.624662 0.64162
Lsi06g01420 Lsi_Chr00 FPKM 2.969101 2.398225 14.325903 14.301897 0.718155 0.615749 0.701728 0.703767 0.789257 0.911756
Lsi06g01420 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.178968 0.140438 0.079898