Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01421 ATGGACGAAATTTCTCTCATCGTCGCCGCCGTTGTAGTAACCTTGGCCTACGCCATCCTCCTCCACCGCGCTTTCTTCCTCCGCCGCAGATTCTGCCTCCCGCCTGGTCCAAAACCATGGCCGATCGTAGGAAACATGCCGCAAATCGGCGGAGCGCCTCTCCACTCCCTCCTCGCCGCCATGGCCGGCGAGTACGGACCTCTGATGTACCTCCGATTAGGATCCGTTGACGTGGTCGTGGCGGCGTCGGCGTCGGTGGCGGAGCAACTCTTGAAGATTCACGGCACTAATTTCCTTAGCCGGCCGCCGAACGCCGGCGCAAAATATATTGCGTATAATAATCGGGATATGGTTTTTGCACCGTACGGTCCACGGTGGCGATTACTCCGGAAGATCAGCACCGTCCATCTGTTCTCCTCAAAAGCCCTAGATGATCATCGCCGCATACGGGAGGAGGAGATAGGGGTGCTGGTACAGGCTCTTGCAAGGTCCGGCGAAGCTCCGGCGACCTTGGGGAGCTTGCTCACCGTGTGCACTGCGAATGTGCTTGGACGGACAATGATCAGCCGACGTGTTTTCGGTGATGGTAGCGGCGGCGATCCAGAGGCAAACATATTTAAGGCAATGGTGGAGCAAGTGATGGTGCTGCCCGGAAAGTTCAACCCCGGTGACTTTTTCCCGTCGCTTGAGTGGCTTGATTTGCTGGGTGTGGCAAGTGAGATGAAGAAGGTCCACAAATGGTTCGATGATTTTTTGACCAAGATCGTGGAGGAGCACCGGAATTTATTGGCCGGAGGCGGCGACCGAGGCGGCGACCAAGACTTACTGAGTACTCTTCTGTCATCGAAGGATGAAGCTGAAGATGAGAATGAGAAGCTTAATGACAGTGAGATCAAGGCTTTGTTGTTGAACATGTTTACAGCTGGAACCGACACGTCAGCTAGCACAGTGGAATGGGCCTTGACAGAGCTCATCAGACATCCCAAAATAATGGCCGAGGCCCAGAAAGAATTGGACACCGTAGTGGGCCGTGATCGCGCAGTTTCCGATCTGGACTTGTCGCAACTGCCCTATCTCCAGGCGGTGGTGAAGGAAACATTCCGGCTCCATCCACCGACGCCGCTCTCCGTCCCTCGCATGGCCGCCGAGAGCTGCGAAATCAACGGCTACCACATCCCCAAAGGCTCCACTCTCTTGGTCGACATATGGGCCATTAGTCGTGACCCAAAAGAATGGGCCGACCCACTCGAGTTCAGGCCCAATAGGTTCCTCCCAGGCGGCGAGAAGGCCCACGTGGATGTGAAGGGAAATGATTTTGAGGTGATTCCGTTTGGGGCTGGGCGGAGGATCTGCGTGGGTATGAGTATGGGCCTGATGATGGTCCAGATGTTAACTGCCACGCTGGCCCATTCTTTTGATTGGGCCTTGCCTAATGGGCTTTTGCCTGATAAGTTGAACATGGACGAGGCCTATGGGCTGACTCTGCGTCGGGCCCAACCCTTGGTTGTGCATCCACGGCCCAGATTATTGCCTGGGTACTTTCCGGCCGGCGGCAACTCATCGCCGGCGTCTTCCGCCTTCCGAGTTTTG 1590 56.04 MDEISLIVAAVVVTLAYAILLHRAFFLRRRFCLPPGPKPWPIVGNMPQIGGAPLHSLLAAMAGEYGPLMYLRLGSVDVVVAASASVAEQLLKIHGTNFLSRPPNAGAKYIAYNNRDMVFAPYGPRWRLLRKISTVHLFSSKALDDHRRIREEEIGVLVQALARSGEAPATLGSLLTVCTANVLGRTMISRRVFGDGSGGDPEANIFKAMVEQVMVLPGKFNPGDFFPSLEWLDLLGVASEMKKVHKWFDDFLTKIVEEHRNLLAGGGDRGGDQDLLSTLLSSKDEAEDENEKLNDSEIKALLLNMFTAGTDTSASTVEWALTELIRHPKIMAEAQKELDTVVGRDRAVSDLDLSQLPYLQAVVKETFRLHPPTPLSVPRMAAESCEINGYHIPKGSTLLVDIWAISRDPKEWADPLEFRPNRFLPGGEKAHVDVKGNDFEVIPFGAGRRICVGMSMGLMMVQMLTATLAHSFDWALPNGLLPDKLNMDEAYGLTLRRAQPLVVHPRPRLLPGYFPAGGNSSPASSAFRVL 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24754847 24760856 - Lsi06G014210.1 Lsi06g01421 666151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01421 530 Pfam Cytochrome P450 34 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 444 453 IPR017972 GO:0005506|GO:0016705
Lsi06g01421 530 PANTHER CYTOCHROME P450 71B11-RELATED 7 508 - -
Lsi06g01421 530 Coils Coil 276 299 - -
Lsi06g01421 530 Gene3D Cytochrome P450 28 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 PRINTS E-class P450 group I signature 441 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 PRINTS E-class P450 group I signature 451 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 SUPERFAMILY Cytochrome P450 34 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 PANTHER FLAVONOID 3'-MONOOXYGENASE CYP75B4 7 508 - -
Lsi06g01421 530 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 PRINTS P450 superfamily signature 451 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 PRINTS P450 superfamily signature 442 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01421 530 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01421 Lsi-Chr6:24754847 Lsi01g00721 Lsi-Chr1:5720652 7.68E-136 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01421 K05280 - csv:101207160 850.892